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2023

RegulonDB v12.0: a comprehensive resource of transcriptional regulation in E. coli K-12

Nucleic Acids Research

H. Salgado, S. Gama-Castro, P. Lara, C. Mejia-Almonte, G. Alarcón-Carranza, A. G. López-Almazo, F. Betancourt-Figueroa, P. Peña-Loredo, S. Alquicira-Hernández, D. Ledezma-Tejeida, L. Arizmendi-Zagal, F. Mendez-Hernandez, A. K. Diaz-Gomez, E. Ochoa-Praxedis, L. J. Muñiz-Rascado, J. S. García-Sotelo, F. A. Flores-Gallegos, L. Gómez, C. Bonavides-Martínez, V. M. del Moral-Chávez, A. J. Hernández-Alvarez, A. Santos-Zavaleta, S. Capella-Gutierrez, J. Lluis Gelpí, and J. Collado-Vides
Efficient Execution of SpGEMM on Long Vector Architectures

HPDC '23: Proceedings of the 32nd International Symposium on High-Performance Parallel and Distributed Computing

V. Le Fèvre, and M. Casas
An Open-Source Framework for Efficient Numerically-Tailored Computations

33rd International Conference on Field-Programmable Logic and Applications (FPL)

L. Ledoux, and M. Casas
A new paradigm for molecular dynamics databases: the COVID-19 database, the legacy of a titanic community effort

Nucleic Acids Research

D. Beltrán, A. Hospital, J. Lluis Gelpí, and M. Orozco
Ameliorating the Courant-Friedrichs-Lewy condition in spherical coordinates: A double FFT filter method for general relativistic MHD in dynamical spacetimes

Phys. Rev. D

L. Ji, V. Mewes, Y. Zlochower, L. Ennoggi, F. G. Lopez Armengol, M. Campanelli, F. Cipolletta, and Z. B. Etienne
Systematic characterization of regulatory variants of blood pressure genes

Cell Genomics

W. Oliveros, K. Delfosse, D. F. Lato, K. Kiriakopulos, M. Mokhtaridoost, A. Said, B. J. McMurray, J. W. L. Browning, K. Mattioli, G. Meng, J. Ellis, S. Mital, M. Melé, and P. G. Maass
Single-cell profiling of lncRNA expression during Ebola virus infection in rhesus macaques

Nature communications

L. Santus, M. Sopena Ríos, R. García-Pérez, A. E. Lin, G. C. Adams, K. G. Barnes, K. J. Siddle, S. Wohl, F. Reverter, J. L. Rin, R. S. Bennet, L. E. Hensley, P. C. Sabet, and M. Melé
The relapsed acute lymphoblastic leukemia network (ReALLNet): a multidisciplinary project from the spanish society of pediatric hematology and oncology (SEHOP)

Frontiers in pediatrics

P. Velasco, F. Bautista, A. Rubio, Y. Aguilar, S. Rives, J. L. Dapena, A. Pérez, M. Ramirez, C. Saiz-Ladera, E. Izquierdo, A. Escudero, M. Camós, N. Vega-García, M. Ortega, G. Hidalgo-Gómez, C. Palacio, P. Menéndez, C. Bueno, J. Montero, P. A. Romecín, S. Zazo, F. Alvarez, J. Parras, C. Ortega-Sabater, S. Chulián, M. Rosa, D. Cirillo, E. García, J. García, A. Manzano-Muñoz, A. Minguela, and J. L. Fuster
PhysiBoSS 2.0: a sustainable integration of stochastic Boolean and agent-based modelling frameworks

npj Syst Biol Appl

M. Ponce-de-Leon, A. Montagud, V. Noël, A. Meert, G. Pradas, E. Barillot, L. Calzone, and A. Valencia
The FAIR Cookbook - the essential resource for and by FAIR doersAbstractThe FAIR Cookbook - the essential resource for and by FAIR doers

Scientific Data

P. Rocca-Serra, W. Gu, V. Ioannidis, T. Abbassi-Daloii, S. Capella-Gutierrez, I. Chandramouliswaran, A. Splendiani, T. Burdett, R. T. Giessmann, D. Henderson, D. Batista, I. Emam, Y. Gadiya, L. Giovanni, E. Willighagen, C. Evelo, A. J. G. Gray, P. Gribbon, N. Juty, D. Welter, K. Quast, P. Peeters, T. Plasterer, C. Wood, E. van der Horst, D. Reilly, H. van Vlijmen, S. Scollen, A. Lister, M. Thurston, R. Granell, G. Backianathan, S. Baier, A. Cambon Thomsen, M. Cook, M. Courtot, M. d’Arcy, K. Dauth, E. Marin del Piico, L. Garcia, U. Goldmann, V. Grouès, D. J. B. Clarke, E. Lefloch, I. Liyanage, P. Papadopoulos, C. Pommier, E. Reynares, F. Ronzano, A. Delfin-Rossaro, V. Sagatopam, A. Sedani, V. Sedlyarov, L. Shilova, S. Singh, J. Strubel, K. van Bochove, Z. Warnes, P. Woollard, F. Xu, A. Zaliani, and S-A. Sansone

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