Machine Learning for Biomedical Research

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2024

Lung Tissue Multi-Layer Network Analysis Uncovers the Molecular Heterogeneity of COPD

Am J Respir Crit Care Med .

N. Olvera, J. Sánchez-Valle, I. Núñez-Carpintero, J. Rojas-Quintero, G. Noell, S. Casas-Recasens, A. Faiz, P. Hansbro, A. Guirao, R. Lepore, D. Cirillo, A. Agustí, F. Polverino, A. Valencia, and R. Faner
Abortion and Miscarriage on Twitter: Sentiment and Polarity Analysis from a gendered perspective

WEBSCI '24: Proceedings of the 16th ACM Web Science Conference

O. Philippe, M. Flores Rodero, C. Yohalem Furtick, L. Planas Simón, M. Teresa Ferretti, A. Santuccion Chadha, L. Subirats Maté, D. Cirillo, and M. José Rementeria
Rare disease research workflow using multilayer networks elucidates the molecular determinants of severity in Congenital Myasthenic Syndromes

Nature Communications

I. Núñez-Carpintero, M. Rigau, M. Bosio, E. O'Connor, S. Spendiff, Y. Azuma, A. Topf, R. Thompson, T. Chamova, I. Tournev, V. Guergueltcheva, S. Laurie, S. Beltran, S. Capella-Gutierrez, D. Cirillo, H. Lochmüller, and A. Valencia
Novel genotype–phenotype correlations, differential cerebellar allele‑specific methylation, and a common origin of the (ATTTC)n insertion in spinocerebellar ataxia type 37

Human Genetics

M. Sanchez-Flores, , E. Gasch-Navalón, D. Cirillo, I. Sanchez, and A. Matilla-Dueñas

2023

Sistemas electrónicos de apoyo a la toma de decisiones clínicas en pacientes con cáncer de mama, pulmón, colon-recto o próstata

Informes, estudios e investigación / Ministerio de Sanidad. Informes de Evaluación de Tecnologías Sanitarias

, E. Gallastegui-Calvache, D. Cirillo, A. Font Pous, E. Felip Falgàs, M-D. Estrada Sabadell, and R. Maria Viva Hidalgo
The PENGUIN approach to reconstruct protein interactions at enhancer-promoter regions and its application to prostate cancer

Nature Communications

A. Armaos, F. Serra, I. Núñez-Carpintero, J-H. Seo, S. C. Baca, S. Gustincich, A. Valencia, M. L. Freedman, D. Cirillo, C. Giambartolomei, and G. Gaetano Tartaglia
The relapsed acute lymphoblastic leukemia network (ReALLNet): a multidisciplinary project from the spanish society of pediatric hematology and oncology (SEHOP)

Frontiers in pediatrics

P. Velasco, F. Bautista, A. Rubio, Y. Aguilar, S. Rives, J. L. Dapena, A. Pérez, M. Ramirez, C. Saiz-Ladera, E. Izquierdo, A. Escudero, M. Camós, N. Vega-García, M. Ortega, G. Hidalgo-Gómez, C. Palacio, P. Menéndez, C. Bueno, J. Montero, P. A. Romecín, S. Zazo, F. Alvarez, J. Parras, C. Ortega-Sabater, S. Chulián, M. Rosa, D. Cirillo, E. García, J. García, A. Manzano-Muñoz, A. Minguela, and J. L. Fuster
Raising awareness of sex and gender bias in artificial intelligence and health

Front. Glob. Womens Health

N. Buslón, A. Cortés, S. Catuara-Solarz, D. Cirillo, and M. José Rementeria
Infrastructure for synthetic health data

BioHackrXiv

N. QueraltRosinach, B. Alshaikhdeeb, L. Bolzani, M. Shoaib, M. Casado Barbero, S. Aguiló-Castillo, D. Cirillo, L. Jael Castro, G. Tsueng, M. Kalaš, M. Palmblad, D. Welter, S. Ghosh, V. Pardhasara Satagopam, and R. S. Malik Sheriff

2022

Auditing the quality of datasets used in algorithmic decision-making systems

Publications Office of the European Union

I. de MiguelBeriain, P. Nicolás Jiménez, M. José Rementeria, D. Cirillo, A. Cortés, D. Saby, G. Lazcoz Moratino, and D-G. for Parlia Parliament
Bias and fairness in machine learning and artificial intelligence

Elsevier Academic Press

D. Cirillo, and M. José Rementeria
Sex and gender bias in natural language processing

Elsevier Academic Press

D. Cirillo, H. Gonen, E. Santus, A. Valencia, M. R. Costa-jussà, and M. Villegas
Auditing the quality of datasets used in algorithmic decision-making systems

European Parliament. Directorate General for Parliamentary Research Services

I. de MiguelBeriain, P. Nicolás Jiménez, M. José Rementeria, D. Cirillo, A. Cortés, D. Saby, and G. Lazcoz Moratino
Sex and Gender Bias in Technology and Artificial Intelligence: Biomedicine and Healthcare Applications

Elsevier Academic Press

D. Cirillo, S. Catuara-Solarz, and E. Guney
Digital biomarkers and sex impacts in Alzheimer’s disease management — potential utility for innovative 3P medicine approach

EPMA Journal

R. L. Harms, A. Ferrari, I. B. Meier, J. Martinkova, E. Santus, N. Marino, D. Cirillo, S. Mellino, S. Catuara Solarz, I. Tarnanas, C. Szoeke, J. Hort, A. Valencia, M. Teresa Ferretti, A. Seixas, and A. Santuccion Chadha

2021

Llibre blanc sobre la Intel·ligència Artificial aplicada a la salut

CIDAI-LlibreBlanc-2021-02

F. Miralles, V. Ribas, C. Gallego, J. Guanyabens, M. Valls, D. Cirillo, A. Jené, C. Sierra, D. Gil, C. Sanchez, X. Llopis, K. Gisbert, and A. Vellido
The multilayer community structure of medulloblastoma

iScience

I. Núñez-Carpintero, M. Petrizzelli, A. Zinovyev, D. Cirillo, and A. Valencia
Artificial Intelligence–Aided Precision Medicine for COVID-19: Strategic Areas of Research and Development

Journal of Medical Internet Research

E. Santus, N. Marino, D. Cirillo, E. Chersoni, A. Montagud, A. Santuccion Chadha, A. Valencia, K. Hughes, and C. Lindvall
Artificial intelligence in cancer research: learning at different levels of data granularity

Molecular Oncology

D. Cirillo, I. Núñez-Carpintero, and A. Valencia

2020

How to Design AI-Driven Clinical Trials in Nuclear Medicine

Seminars in Nuclear Medicine

G. Delso, D. Cirillo, J. D. Kaggie, A. Valencia, U. Metser, and P. Veit-Haibach
Sex and gender differences and biases in artificial intelligence for biomedicine and healthcare

Nature Digital Medicine

D. Cirillo, S. Catuara-Solarz, C. Morey, E. Guney, L. Subirats, S. Mellino, A. Gigante, A. Valencia, M. José Rementeria, A. Santuccion Chadha, and N. Mavridis