Publications

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2014

Structure and properties of DNA in apolar solvents.

J Phys Chem B

A. Arcella, G. Portella, R. Collepardo-Guevara, D. Chakraborty, D. J. Wales, and M. Orozco
A comprehensive DNA methylation profile of epithelial-to-mesenchymal transition.

Cancer Res

J. F Carmona, V. Davalos, E. Vidal, A. Gomez, H. Heyn, Y. Hashimoto, M. Vizoso, A. Martinez-Cardus, S. Sayols, H. J. Ferreira, J. V. Sánchez-Mut, S. Morán, M. Margelí, E. Castella, M. Berdasco, O. A. Stefansson, J. E. Eyfjord, E. Gonzalez-Suarez, J. Dopazo, M. Orozco, I. G. Gut, and M. Esteller
Direct measurement of the dielectric polarization properties of DNA.

Proc Natl Acad Sci U S A

A. Cuervo, P. D. Dans, J. L. Carrascosa, M. Orozco, G. Gomila, and L. Fumagalli
Unraveling the sequence-dependent polymorphic behavior of d(CpG) steps in B-DNA.

Nucleic Acids Res

P. DanielDans, I. Faustino, F. Battistini, K. Zakrzewska, R. Lavery, and M. Orozco
μABC: a systematic microsecond molecular dynamics study of tetranucleotide sequence effects in B-DNA.

Nucleic Acids Res

M. Pasi, J. H. Maddocks, D. Beveridge, T. C. Bishop, D. A. Case, T. Cheatham, P. D. Dans, B. Jayaram, F. Lankaš, C. Laughton, J. Mitchell, R. Osman, M. Orozco, A. Pérez, D. Petkevičiūtė, N. Spackova, J. Sponer, K. Zakrzewska, and R. Lavery
High Throughput Computational Studies of Macromolecular Structure Flexibility

A. Hospital, J L. Gelpí, and M. Orozco
Discrete Molecular Dynamics

Computational Approaches to Protein Dynamics: From Quantum to Coarse-Grained Methods

P. Sfriso, A. Emperador, J L. Gelpí, and M. Orozco
Using HPC Software Frameworks for Developing BSIT: A Geophysical Imaging Tool

Proceedings of WCCM XI, ECCM V, ECFD VI

M. Hanzich, J E. Rodriguez, N. Gutierrez, J. de la Puente, and J M.. Cela
High level queuing architecture model for high-end processors

D. Roca, M. Nemirovsky, M. Moreto, and M. Casas
Performance Analysis of the Memory Management Unit under Scale-out Workloads

V. Karakostas, O. Unsal, M. Nemirovsky, A. Cristal, and M. Swift

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