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2021

Network neighbors of viral targets and differentially expressed genes in COVID-19 are drug target candidates

Network neighbors of viral targets and differentially expressed genes in COVID-19 are drug target candidates

C. Zambrana, A. Xenos, R. Böttcher, N. Malod-Dognin, and N. Pržulj
Four algorithms to solve symmetric multi-type non-negative matrix tri-factorization problem

Journal of Global Optimization

R. Hribar, T. Hrga, G. Papa, G. Petelin, J. Povh, N. Pržulj, and V. Vukašinović
Integrative Data Analytic Framework to Enhance Cancer Precision Medicine

Network and Systems Medicine

T. Gaudelet, N. Malod-Dognin, and N. Pržulj
Linear functional organization of the omic embedding space

Bioinformatics

A. Xenos, N. Malod-Dognin, S. Milinković, and N. Pržulj
Multi-project and Multi-profile joint Non-negative Matrix Factorization for cancer omic datasets

Bioinformatics

D. A. Salazar, N. Pržulj, and C. F. Valencia

2020

Classification in biological networks with hypergraphlet kernels

Bioinformatics

J. Lugo-Martinez, D. Zeiberg, T. Gaudelet, N. Malod-Dognin, N. Pržulj, and P. Radivojac
Antiproliferative activity and mode of action analysis of novel amino and amido substituted phenantrene and naphtho[2,1-b]thiophene derivatives

European Journal of Medicinal Chemistry

N. Perin, V. Rep, I. Sović, Š. Juričić, D. Selgrad, M. Klobučar, N. Pržulj, C. Lal Gupta, N. Malod-Dognin, S. Kraljević Pavelić, and M. Hranjec
Unveiling new disease, pathway, and gene associations via multi-scale neural network

PLOS ONE

T. Gaudelet, N. Malod-Dognin, J. Sánchez-Valle, V. Pancaldi, A. Valencia, and N. Pržulj
Chromatin network markers of leukemia

Bioinformatics

N. Malod-Dognin, V. Pancaldi, A. Valencia, and N. Pržulj
Probabilistic graphlets capture biological function in probabilistic molecular networks

Bioinformatics

S. Doria-Belenguer, M. K. Youssef, R. Böttcher, N. Malod-Dognin, and N. Pržulj

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