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2022

Pre-exascale HPC approaches for molecular dynamics simulations. Covid-19 research: A use case

WIREs Computational Molecular Science

M. Wieczór, V. Genna, J. Aranda, R. M. Badia, J. Lluis Gelpí, V. Gapsys, B. L. de Groot, E. Lindahl, M. Municoy, A. Hospital, and M. Orozco
ATM germline variants in a young adult with chronic lymphocytic leukemia: 8 years of genomic evolution

Blood Cancer Journal

R. Royo, L. Magnano, J. Delgado, S. Ruiz-Gil, J. Ll. Gelpi, H. Heyn, M. A. Taylor, T. Stankovic, X. S. Puente, F. Nadeu, and E. Campo
BioExcel Building Blocks Workflows (BioBB-Wfs), an integrated web-based platform for biomolecular simulations

Nucleic Acids Research

G. Bayarri, P. Andrio, A. Hospital, M. Orozco, and J. Lluis Gelpí
GCAT|Panel, a comprehensive structural variant haplotype map of the Iberian population from high-coverage whole-genome sequencing

Nucleic Acids Research

J. Valls-Margarit, I. Galván-Femenía, D. Matías-Sánchez, N. Blay, M. Puiggròs, A. Carreras, C. Salvoro, B. Cortés, R. Amela, X. Farre, J. Lerga-Jaso, M. Puig, J. Francisco Sánchez-Herrero, V. Moreno, M. Perucho, L. Sumoy, L. Armengol, O. Delaneau, M. Cáceres, R. de Cid, and D. Torrents
GCAT|Panel, a comprehensive structural variant haplotype map of the Iberian population from high-coverage whole-genome sequencing

Nucleic Acids Research

J. Valls-Margarit, I. Galván-Femenía, D. Matías-Sánchez, N. Blay, M. Puiggròs, A. Carreras, C. Salvoro, B. Cortés, R. Amela, X. Farre, J. Lerga-Jaso, M. Puig, J. Francisco Sánchez-Herrero, V. Moreno, M. Perucho, L. Sumoy, L. Armengol, O. Delaneau, M. Cáceres, R. de Cid, and D. Torrents
Clustering and graph mining techniques for classification of complex structural variations in cancer genomes

Scientific Reports

G. Gomez-Sanchez, L. Delgado-Serrano, D. Carrera, D. Torrents, and J L. Berral
Chromosome-level assembly, annotation and phylome of Pelobates cultripes, the western spadefoot toad

DNA Research

H. ChristophLiedtke, F. Cruz, J. Gómez-Garrido, D. Fuentes Palacios, M. Marcet-Houben, M. Gut, T. Alioto, T. Gabaldón, and I. Gomez-Mestre
Using genomics to understand the mechanisms of virulence and drug resistance in fungal pathogens

Biochemical Society Transactions

M. ÀngelSchikora-Tamarit, and T. Gabaldón
Evolutionary analyses of genes in Echinodermata offer insights towards the origin of metazoan phyla

Genomics

S. Foley, A. Vlasova, M. Marcet-Houben, T. Gabaldón, and V. F. Hinman
Secondary structure prediction of long noncoding RNA: review and experimental comparison of existing approaches

Briefings in Bioinformatics

L. A. Bugnon, A. A. Edera, S. Prochetto, M. Gerard, J. Raad, E. Fenoy, M. Rubiolo, U. Chorostecki, T. Gabaldón, F. Ariel, L. E. Di Persia, D. H. Milone, and G. Stegmayer

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