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Efficient relaxation of protein-protein interfaces by discrete molecular dynamics simulations. Journal of Chemical Theory and Computation 9, 1222–1229 (2013).
Expanding the frontiers of protein-protein modeling: from docking and scoring to binding affinity predictions and other challenges. Proteins 81, 2192-200 (2013).
pyDockWEB: a web server for rigid-body protein-protein docking using electrostatics and desolvation scoring. Bioinformatics (Oxford, England) 29, 1698-9 (2013).
Cell-Dock: high-performance protein-protein docking. Bioinformatics (2012).doi:10.1093/bioinformatics/bts454
Cell-Dock: high-performance protein-protein docking. Bioinformatics (Oxford, England) 28, 2394-6 (2012).
H-bond network optimization in protein-protein complexes: are all-atom force field scores enough?. Proteins 80, 818-24 (2012).
Community-wide assessment of protein-interface modeling suggests improvements to design methodology. Journal of molecular biology 414, 289-302 (2011).
H-bond network optimization in protein-protein complexes: Are all-atom force field scores enough?. Proteins (2011).doi:10.1002/prot.23239
Prediction of protein-binding areas by small-world residue networks and application to docking. BMC bioinformatics 12, 378 (2011).
Scoring by intermolecular pairwise propensities of exposed residues (SIPPER): a new efficient potential for protein-protein docking. Journal of chemical information and modeling 51, 370-7 (2011).