Publications

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Author Title Type [ Year(Asc)]
2013
S. Marras, Moragues, M., Vázquez, M., Jorba, O., and Houzeaux, G., Simulations of moist convection by a variational multiscale stabilized finite element method, Journal of Computational Physics, vol. 252. ACADEMIC PRESS INC ELSEVIER SCIENCE, UNITED STATES, pp. 195 - 218, 2013.
F. M. Lucas and Guallar, V., Single vs. multiple ligand pathways in globins: A computational view., Biochimica et biophysica acta. 2013.
F. M. Lucas and Guallar, V., Single vs. multiple ligand pathways in globins: A computational view., Biochimica et biophysica acta. 2013.
J. M. Baldasano, Terradellas, E., and Cuevas, E., Sistema d'avaluació i Avís de Tempestes de Pols i Sorra de L'OMM (WMO SDS-WAS), XIX Jornades de Meteorología Eduard Fonserè, vol. . Associació Catalana de Meteorologia (ACAM), 22-24 November, 2013. Barcelona. Spain, pp. 105-118, 2013.
J. M. Baldasano, Arévalo, G., and Gassó, S., Sistema de Pronòstic de la Qualitat de l'Aire, XIX Jornades Eduard Fontseré (JEF) 2013, vol. . Associació Catalana de Meteorologia (ACAM), 22-24 November, 2013. Barcelona. Spain, 2013.
A. Rincón, Sistema de pronóstico de radiación solar a corto plazo a partir de un modelo meteorológico y técnicas de post-proceso para España, Universitat Politècnica de Catalunya, 2013.
J. M. Baldasano, Sistemas de pronóstico de la calidad del aire: funciones básicas y requerimientos, Jornada Luso-Española de Calidad del Aire, vol. . MAGRAMA, 31 Octubre, 2013. Madrid, Spain, 2013.
P. Wittek and Rubio-Campillo, X., Social Simulations Accelerated: Large-Scale Agent-Based Modeling on a GPU Cluster, GPU Technology Conference. USA, 2013.
A. Rincón, Jorba, O., Monache, D. L., and Baldasano, J. M., Solar Irradiance Forecast System Based On Post-Processing Techniques Applied On WRF-ARW Meteorological Simulations In Spain, ICEM 2013: 2nd International Conference Energy&Meteorology, vol. . Meto France, 26-28 June, 2013. Toulouse, France, 2013.
F. Risso, Nemirovsky, M., and Manzalini, A., Some Controversial Opinions on Software-Defined Data Plane Services, IEEE Software Defined Networks for Future Networks and Services 2013 . 2013.
M. Sicard, Pey, J., Cerro, J. C., Lange, D., Caballero, S., Tovar-Sánches, A., Morales-Baquer0, R., Comerón, A., Bujosa, C., Querol, X., Artiñano, B., Alados-Arboledas, L., Basart, S., Alastuey, A., Baldasano, J. M., Rocadenbosch, F., Muñoz, A., Muñoz, C., García-Vizcaino, D., Rodríguez, A., Bach, J., and Bush, X., Spanish activities in the framework of the ChArMEx project since 2009: a summary, RICTA2013 1st Iberian Meeting on Aerosol Science and Technology, vol. . Universidade de Evora and Évora Geophysics Centre, 1-3 July, 2013. Evora, Portugal, pp. 125-129, 2013.
A. Aviñó, Portella, G., Ferreira, R., Gargallo, R., Mazzini, S., Gabelica, V., Orozco, M., and Eritja, R., Specific loop modifications of the thrombin-binding aptamer trigger the formation of parallel structures., The FEBS journal. 2013.
J. L. Lérida, Solsona, F., Hernández, P., Giné, F., Hanzich, M., and Conde, J., State-based predictions with self-correction on Enterprise Desktop Grid environments, Journal of Parallel and Distributed Computing, vol. 73, no. 6. Elsevier, pp. 777-789, 2013.
Y. Chen, Tascón, I., Neunuebel, R. M., Pallara, C., Brady, J., Kinch, L. N., Fernández-Recio, J., Rojas, A. L., Machner, M. P., and Hierro, A., Structural basis for Rab1 de-AMPylation by the Legionella pneumophila effector SidD., PLoS pathogens, vol. 9, no. 5. p. e1003382, 2013.
L. Pérez Cano, Structural prediction and characterization of protein-RNA interactions, 2013.
T. Dršata, Pérez, A., Orozco, M., Morozov, A. V., Sponer, J., and Lankaš, F., Structure, Stiffness and Substates of the Dickerson-Drew Dodecamer., Journal of chemical theory and computation, vol. 9, no. 1. pp. 707-721, 2013.
N. Rajovic, Carpenter, P., Gelado, I., Puzovic, N., Ramirez, A., and Valero, M., Supercomputing with commodity CPUs: are mobile SoCs ready for HPC?, SC13: International Conference for High Performance Computing, Networking, Storage and Analysis. Denver, United States, pp. 40–40, 2013.
Z. Stephenson, Abella, J., and Vardanega, T., Supporting Industrial Use of Probabilistic Timing Analysis with Explicit Argumentation, 11th IEEE International Conference on Industrial Informatics (INDIN). IEEE, Bochum, Germany, pp. 734–740, 2013.
J. E. Rodriguez and Hanzich, M., Supporting Massive Parallelism in Seismic Processing, 75th EAGE Conference & Exhibition. pp. Tu-P10-11, 2013.
M. Torchala, Moal, I. H., Chaleil, R. A. G., Fernández-Recio, J., and Bates, P. A., SwarmDock: a server for flexible protein-protein docking., Bioinformatics (Oxford, England). 2013.
L. Mona, Papagiannopoulos, N., Basart, S., Baldasano, J., Binietoglou, I., Cornacchia, C., and Pappalardo, G., Systematic comparison of dust BSC-DREAM8b modeled profiles with Potenza EARLINET lidar database, Atmospheric Chemistry and Physics Discussions, vol. 13. Copernicus Publications, Germany, pp. 31363–31407, 2013.
R. Bertran, Gonzalez, M., Martorell, X., Navarro, N., and Ayguade, E., A Systematic Methodology to Generate Decomposable and Responsive Power Models for CMPs, IEEE Transactions on Computers, vol. 62. IEEE Computer Society, Los Alamitos, CA, USA, pp. 1289-1302, 2013.
C. Camarero, Vallejo, E., Martinez, C., Moreto, M., and Beivide, R., Task Mapping in Rectangular Twisted Tori, Proceedings of the High Performance Computing Symposium. Society for Computer Simulation International, San Diego, CA, USA, pp. 15:1–15:11, 2013.
T. Grass, Task Sampling: Computer Architecture Simulation in the Many-Core Era, 22nd international conference on Parallel Architectures and Compilation Techniques. IEEE Press Piscataway, NJ, USA, Edinburgh, United Kingdom, pp. 405–406, 2013.
A. Armejach, Gil, R. T. J., Negi, A., Unsal, O., and Cristal, A., Techniques to Improve Performance in Requester-wins Hardware Transactional Memory, ACM Transactions on Architecture and Code Optimization, vol. 10. 2013.
N. Alexandrov, Ramírez Velarde, R., and Alexandrov, V., Technological Advances in Interactive Collaborative Learning, 1st editionst ed. New York: CRC Press, Taylor and Francis, 2013.
M. Gonçalves, Barrera-Escoda, A., Guerreiro, D., Cunillera, J., and Baldasano, J. M., Temperature and precipitation trends for Catalonia as derived from dynamical downscaling of climate scenarios, 4th International Meeting on Meteorology and Climatology of the Mediterranean (4th IMMCM), vol. . Network of Meteorology of the Mediterranean and Associació Catalan de Meteorologia, February 27 - March 1, 2013. Banyuls (Roussillon), France, 2013.
M. Solinas, Badia, R. M., Bodin, F., Cohen, A., Evripidou, P., Faraboschi, P., Navarro, N., and Valero, M., The TERAFLUX Project: Exploiting the DataFlow Paradigm in Next Generation Teradevices, Euromicro Conference on Digital System Design, DSD 2013. IEEE Computer Society, Santander, Spain, pp. 272–279, 2013.
J. A. Colmenares, Eads, G., Hofmeyr, S., Bird, S., Moretó, M., Chou, D., Gluzman, B., Roman, E., Bartolini, D. B., Mor, N., Asanović, K., and Kubiatowicz, J. D., Tessellation: refactoring the OS around explicit resource containers with continuous adaptation, Proceedings of the 50th Annual Design Automation Conference. ACM, New York, NY, USA, pp. 76:1–76:10, 2013.
P. Radojkovic, Cakarevic, V., Verdu, J., Pajuelo, A., Cazorla, F. J., Nemirovsky, M., and Valero, M., Thread Assignment of Multithreaded Network Applications in Multicore/Multithreaded Processors, IEEE Transactions on Parallel and Distributed Systems, vol. 24. IEEE Computer Society, Los Alamitos, CA, USA, pp. 2513-2525, 2013.
M. Paolieri, Quiñones, E., and Cazorla, F. J., Timing Effects of DDR Memory Systems in Hard Real-time Multicore Architectures: Issues and Solutions, ACM Trans. Embed. Comput. Syst., vol. 12. ACM, New York, NY, USA, pp. 64:1–64:26, 2013.
V. Smiljkovic, Nowack, M., Miletic, N., Harris, T., Unsal, O., Cristal, A., and Valero, M., TM-dietlibc: A TM-aware Real-world System Library, The 27th IEEE International Parallel and Distributed Processing Symposium (IPDPS 2013). IEEE, Boston, United States, 2013.
M. Candotti, Esteban-Martín, S., Salvatella, X., and Orozco, M., Toward an atomistic description of the urea-denatured state of proteins., Proceedings of the National Academy of Sciences of the United States of America, vol. 110, no. 15. pp. 5933-8, 2013.
J. Martí, Gasull, D., Queralt, A., and Cortes, T., Towards DaaS 2.0: Enriching Data Models, Services 2013 - 3rd International Workshop on Formal Methods in Services and Cloud Computing. 2013.
A. Rico, Ramirez, A., and Valero, M., Trace Filtering of Multithreaded Applications for CMP Memory Simulation, IEEE International Symposium on Performance Analysis of Systems and Software (ISPASS-2013). Austin, United States, pp. 134–135, 2013.
A. Jokanovic, Sancho, J. C., Rodriguez, G., Minkenberg, C., Beivide, R., and Labarta, J., On the trade-off of mixing scientific applications on capacity high-performance computing systems, Computers Digital Techniques, IET, vol. 7. pp. 81-92, 2013.
V. Smiljkovic, Stipić, S., Unsal, O., Cristal, A., and Valero, M., Transaction Coalescing - Lowering Transactional Overheads by Merging Transactions, Sixth Workshop on Programmability Issues for Heterogeneous Multicores (MULTIPROG-2013). Berlin, Germany, 2013.
J. J. Valdés, Schwarz, A., Cabeza de Vaca, I., Calvo, E., Pedra, J. H. F., Guallar, V., and Kotsyfakis, M., Tryptogalinin is a tick Kunitz serine protease inhibitor with a unique intrinsic disorder., PloS one, vol. 8, no. 5. p. e62562, 2013.
P. Pessolani, Cortes, T., Gonnet, S., and Tinetti, F., Un mecanismo de IPC de microkernel embebido en el kernel de Linux, Workshop de Investigadores en Ciencias de la Computacion. Parana Entre Rios, Argentina, 2013.
G. Portella, Battistini, F., and Orozco, M., Understanding the connection between epigenetic DNA methylation and nucleosome positioning from computer simulations., PLoS computational biology, vol. 9, no. 11. p. e1003354, 2013.
E. Durán, Djebali, S., González, S., Flores, O., Mercader, J. M., Guigó, R., Torrents, D., Soler-López, M., and Orozco, M., Unravelling the hidden DNA structural/physical code provides novel insights on promoter location., Nucleic acids research, vol. 41, no. 15. pp. 7220-30, 2013.
R. de la Cruz, Hanzich, M., Folch, A., Houzeaux, G., and Cela, J. M., Unveiling WARIS code, a parallel and multi-purpose FDM framework, Lecture Notes in Computational Science and Engineering. 2013.
F. J. Cazorla, Vardanega, T., Quiñones, E., and Abella, J., Upper-bounding Program Execution Time with Extreme Value Theory., 13th International Workshop on Worst-Case Execution Time Analysis. OASIcs, Paris, France, pp. 61–70, 2013.
A. Fries, The use of Java in large scientific applications in HPC environments, Universitat de Barcelona (UB), 2013.
G. Llort, Servat, H., González, J., Giménez, J., and Labarta, J., On the Usefulness of Object Tracking Techniques in Performance Analysis, Proceedings of SC13: International Conference for High Performance Computing, Networking, Storage and Analysis. ACM, New York, NY, USA, pp. 29:1–29:11, 2013.
J. Kormann, Rodriguez, J. E., Gutierrez, N., de la Puente, J., Hanzich, M., and Cela, J. M., Using Power-Model Based Preconditioners for 3D Acoustic Full Waveform Inversion, SEG Technical Program Expanded Abstracts. pp. 1105-1109, 2013.
M. S. Osores, Folch, A., Collini, E., Villarosa, G., and Salmuni, E., Validation of the FALL3D model for the 2008 Chaitén eruption using field, laboratory and satellite data, Andean Geology, vol. 40, no. 2. pp. 262-276, 2013.
M. S. Osores, Folch, A., Collini, E., Villarosa, G., Durant, A., Pujol, G., and Viramonte, J. G., Validation of the FALL3D model for the 2008 Chaitén eruption using field, laboratory and satellite data, Andean Geology, vol. 40. pp. 262-276, 2013.
M. S. Osores, Folch, A., Collini, E., Villarosa, G., and Durant, A., Validation of the FALL3D model for the 2008 Chaitén eruption using field, laboratory and satellite data, Andean Geology, no. 40. pp. 262-276, 2013.
A. Mortier, Goloub, P., Podvin, T., Tanré, D., Deroo, C., Diallo, A., Diallo, T., Cuevas, E., Basart, S., and Baldasano, J. M., Variability of aerosol properties and radiative forcing over M’Bour (Senegal) as revealed by a 6 year coincident sunphotometer and LIDAR dataset, 7th International Workshop on Sand/Duststorms and Associated Dustfall. ESA/ESRIN, vol. . Laboratory for Earth Observations and Analyses of the Italian National Agency for New Technologies, Energy, and Economic Sustainable Development (ENEA), and by the European Space Agency (ESA), 02-04 December, 2013. Frascati (Rome), Italy, 2013.

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