Publications

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Author Title Type [ Year(Asc)]
2014
B. Varghese, McKee, G., and Alexandrov, V., Automating Fault Tolerance in High-Performance Computational Jobs using Multi-Agent Approaches, Computers in Biology and Medicine, vol. 48 (2014) . pp. pp. 28–41 , 2014.
J. M. Baldasano, Basart, S., Jorba, O., Vendrell, L., and Terradellas, E., Barcelona Dust Forecast Center, DUST2014: International Conference on ATMOSPHERIC DUST. DUST2014: International Conference on ATMOSPHERIC DUST - June 1-6, Castellaneta Marina (Italy), 2014.
O. Ferrer-Roca, Tous, R., and Milito, R., Big and Small data. The FOG, 1st International Conference on Identification, Information and Knowledge in the Internet of the Things. Beijing, China, 2014.
D. Lecina, Binding free energy and ligand orientation calculations using Monte Carlo method with Markov State analysis, Entropy in Biomolecular Systems Workshop. Vienna, Austria . 2014.
D. Repchevsky and Gelpi, J. Ll, BioSWR--semantic web services registry for bioinformatics., PLoS One, vol. 9, no. 9. p. e107889, 2014.
S. Zafer Can, Yalcin, G., Ergin, O., Unsal, O., and Cristal, A., Bit Impact Factor: Towards making fair vulnerability comparison, Microprocessors and Microsystems, vol. 38. pp. 598–604, 2014.
M. F. Lensink, Moal, I. H., Bates, P. A., Kastritis, P. L., Melquiond, A. S. J., Karaca, E., Schmitz, C., van Dijk, M., Bonvin, A. M. J. J., Eisenstein, M., Jiménez-García, B., Grosdidier, S., Solernou, A., Pérez-Cano, L., Pallara, C., Fernández-Recio, J., Xu, J., Muthu, P., Praneeth Kilambi, K., Gray, J. J., Grudinin, S., Derevyanko, G., Mitchell, J. C., Wieting, J., Kanamori, E., Tsuchiya, Y., Murakami, Y., Sarmiento, J., Standley, D. M., Shirota, M., Kinoshita, K., Nakamura, H., Chavent, M., Ritchie, D. W., Park, H., Ko, J., Lee, H., Seok, C., Shen, Y., Kozakov, D., Vajda, S., Kundrotas, P. J., Vakser, I. A., Pierce, B. G., Hwang, H., Vreven, T., Weng, Z., Buch, I., Farkash, E., Wolfson, H. J., Zacharias, M., Qin, S., Zhou, H. - X., Huang, S. - Y., Zou, X., Wojdyla, J. A., Kleanthous, C., and Wodak, S. J., Blind prediction of interfacial water positions in CAPRI., Proteins, vol. 82, no. 4. pp. 620-32, 2014.
M. Hanzich, Rodriguez, J. E., Gutierrez, N., and Cela, J. M., BSIT: A FLEXIBLE PLATFORM FOR DEVELOPMENT OF EFFICIENT SIMULATION SOFTWARE, IACM - ECCOMAS. Barcelona, 2014.
J. L. Berral, Goiri, Í., Gavaldà, R., Bianchini, R., and Torres, J., Building Green Cloud Services at Low Cost, 34th International Conference on Distributed Computing Systems (ICDCS 2014). Madrid, Spain, 2014.
J. Jalle, Kosmidis, L., Abella, J., Quiñones, E., and Cazorla, F., Bus designs for time-probabilistic multicore processors, Design, Automation and Test in Europe. Dresden, Germany, 2014.
J. Oriol Fitó and Guitart, J., Business-driven Management of Infrastructure-level Risks in Cloud Providers, Future Generation Computer Systems, vol. 32. pp. 41–53, 2014.
M. Macías, Business-Driven Resource Allocation and Management for Data Centres in Cloud Computing Markets, 2014.
M. Macías and Guitart, J., Business-Driven Resource Allocation and Management for Data Centres in Cloud Computing Markets, 2014.
G. Houzeaux, Eguzkitza, B., Aubry, R. J., Owen, H., and Vázquez, M., A {C}himera Method for the {N}avier-{S}tokes Equations, vol. 75. pp. 155-183, 2014.
B. Maric, Cache Designs for Reliable Hybrid High and Ultra-Low Voltage Operation, 2014.
F. Magoulès, Roux, F. X., and Houzeaux, G., Cálculo científico paralelo. CIMNE, 2014.
J. M. Baldasano and Serradell, K., CALIOPE Air Quality Forecasting Systems: Computational Resources and Database, RES-Earth Sciences Seminar. RES-Earth Sciences Seminar, Barcelona (Spain), 29 May, 2014.
M. T. Pay, Baldasano, J. M., Arévalo, G., Sicardi, V., and Serradell, K., CALIOPE forecasts evaluated by DELTA, FAIRMODE Technical Meeting. FAIRMODE Technical Meeting. Kjeller (Norway), 28-29 April, 2014.
V. Gajinov, Eric, I., Stojanovic, S., Milutinovic, V., Unsal, O., Ayguadé, E., and Cristal, A., A Case Study of Hybrid Dataflow and Shared-memory Programming Models: Dependency-based Parallel Game Engine, 26th International Symposium on Computer Architecture and High Performance Computing, SBAC-PAD 2014. Pierre Sens, Philippe O. A. Navaux, Paris, France, pp. 1–8, 2014.
L. Dolores, Rebecca, P., Marina, C., Fatima, L., Victor, G., Maria, C. Baratto, Adalgisa, S., Veronica, S. -jimenez, Cristina, C., Antonio, R., and , Catalytic surface radical in dye-decolorizing peroxidase: A computational, spectroscopic and site-directed mutagenesis study, Biochemical Journal. Portland Press Limited, 2014.
H. Calmet, Gambaruto, A., Houzeaux, G., and Bates, A., Challenge of visualising large airway flows and particle transport, The 5th International Conference on Computational Methods (ICCM2014). Cambridge (UK), 2014.
P. Fuentes, Bosque, J. L., Beivide, R., Valero, M., and Minkenberg, C., Characterizing the Communication Demands of the Graph500 Benchmark on a Commodity Cluster, International Symposium on Big Data Computing (BDC 2014). IEEE/ACM, London, UK, 2014.
P. Fuentes, Bosque, J. Luis, Beivide, R., and Valero, M., Characterizing the Communication Demands of the Graph500 Benchmark on a Commodity Cluster, IEEE/ACM International Symposium on Big Data Computing. 2014.
S. Basart, Nabat, P., Dulac, F., Mallet, M., Baldasano, J. M., Laurent, B., Menut, L., L. Amraoui, E., Chaboureau, J. - P., Léon, J. F., Somon, F., Sic, B., Schepanski, K., and Bouffiès-Cloché, S., ChArMEx dust model intercomparison over summer 2012: preliminary results. Dust Models Intercomp Workshop, Toulouse, 27 March, 2014.
S. Basart, Dulac, F., Baldasano, J. M., Nabat, P., Mallet, M., Roblou, L., Solmon, F., Laurent, B., Vincent, J., Menut, L., Siour, G., L. Amraoui, E., Sic, B., Chaboureau, J. - P., Léon, J. - F., Schepanski, K., J.-B.Renard, Ravetta, F., Pelon, J., Biagio, D. C., Formenti, P., Chiapello, I., Roujean, J. - L., Ceamanos, X., Carrer, D., Sicard, M., Delbarre, H., Bouffiès-Cloché, S., and Attié, J. - L., ChArMEx dust model intercomparison over summer 2012:preliminary results, 4th International Workshop CHArMEx-the Chemistry-Aerosol Mediterranean Experiment . 4th International Workshop CHArMEx-the Chemistry-Aerosol Mediterranean Experiment, Trieste (Italy) October 20-24 , 2014.
G. Houzeaux, Eguzkitza, B., Aubry, R., Owen, H., and Vázquez, M., A Chimera method for the incompressible Navier–Stokes equations, International Journal for Numerical Methods in Fluids, vol. 75, no. 3. pp. 155-183, 2014.
V. Valverde, Pay, M. T., and Baldasano, J. M., Circulation-type classification derived on a climatic basis to study air quality dynamics over the Iberian Peninsula, Article. International Journal of Climatology, 2014.
J. M. Baldasano, Valverde, V., and Pay, M. T., Climatic synoptic classification over the Iberian Peninsula, 25th GLOREAM-EURASAP Workshop on Tropospheric Chemical Transport Modelling. 25th GLOREAM-EURASAP Workshop on Tropospheric Chemical Transport Modelling, Aveiro (Portugal) 6-7 November, 2014.
L. Vilanova, Ben-Yehuda, M., Navarro, N., Etsion, Y., and Valero, M., CODOMs: Protecting Software with Code-centric Memory Domains, 41st International Symposium on Computer Architecture (ISCA). Minneapolis, MN, United States, 2014.
G. Yalcin, Sobe, A., Voronin, A., Wamhoff, J. - T., Harmanci, D., Cristal, A., Unsal, O., Felber, P., and Fetzer, C., Combining Error Detection and Transactional Memory for Energy-efficient Computing below Safe Operation Margins, 22nd Euromicro International Conference on Parallel, Distributed, and Network-Based Processing. Turin, Italy, 2014.
D. Brunner, Savage, N., Jorba, O., Eder, B., Giordano, L., Badia, A., Balzarini, A., Baró, R., Bianconi, R., and Chemel, C., Comparative analysis of meteorological performance of coupled chemistry-meteorology models in the context of AQMEII phase 2., Atmospheric Environment. Elsevier, 2014.
J. Abella, Hardy, D., Puaut, I., Quiñones, E., and Cazorla, F., On the Comparison of Deterministic and Probabilistic WCET Estimation Techniques, 26th Euromicro Conference on Real-Time Systems. IEEE, Madrid, Spain, pp. 266–275, 2014.
V. Moncunill, González, S., Beà, S., Andrieux, L. O., Salaverria, I., Royo, C., Martinez, L., Puiggròs, M., Segura-Wang, M., Stütz, A. M., Navarro, A., Royo, R., Gelpí, J. L., Gut, I. G., López-Otín, C., Orozco, M., Korbel, J. O., Campo, E., Puente, X. S., and Torrents, D., Comprehensive characterization of complex structural variations in cancer by directly comparing genome sequence reads., Nat Biotechnol, vol. 32, no. 11. pp. 1106-12, 2014.
J. F Carmona, Davalos, V., Vidal, E., Gomez, A., Heyn, H., Hashimoto, Y., Vizoso, M., Martinez-Cardus, A., Sayols, S., Ferreira, H. J., Sánchez-Mut, J. V., Morán, S., Margelí, M., Castella, E., Berdasco, M., Stefansson, O. A., Eyfjord, J. E., Gonzalez-Suarez, E., Dopazo, J., Orozco, M., Gut, I. G., and Esteller, M., A comprehensive DNA methylation profile of epithelial-to-mesenchymal transition., Cancer Res, vol. 74, no. 19. pp. 5608-19, 2014.
E. Monza, Computation and experiment meet together: a powerful approach to rational re-design of oxidoreductases, OxiZymes2014. Vienna, Austria . 2014.
G. Andreotti, de Vaca, I. Cabeza, Poziello, A., Monti, M. Chiara, Guallar, V., and Cubellis, M. Vittoria, Conformational Response to Ligand Binding in Phosphomannomutase2 INSIGHTS INTO INBORN GLYCOSYLATION DISORDER, Journal of Biological Chemistry, vol. 289. American Society for Biochemistry and Molecular Biology, pp. 34900–34910, 2014.
C. Pallara, Rueda, M., and Fernández-Recio, J., Conformational selection mechanism in protein-protein association: insights from docking, II Jornada de Bioinformàtica i Biologia Computacional (Barcelona). 2014.
L. Kosmidis, Abella, J., Quiñones, E., Wartel, F., Farrall, G., and Cazorla, F., Containing Timing-Related Certification Cost in Automotive Systems Deploying Complex Hardware, 51th Design Automation Conference (DAC) 2014. San Francisco, United States, pp. 1–6, 2014.
G. Fernandez, Abella, J., Quiñones, E., Rochange, C., Vardanega, T., and Cazorla, F., Contention in Multicore Hardware Shared Resources: Understanding of the State of the Art, 14th International Workshop on Worst-Case Execution Time Analysis. OASIcs, Madrid, Spain, pp. 31–42, 2014.
S. Esteban-Martín, Fenwick, R. Bryn, AAdén, J. \, Cossins, B., Bertoncini, C. W., Guallar, V., Wolf-Watz, M., and Salvatella, X., Correlated Inter-Domain Motions in Adenylate Kinase, PLoS computational biology, vol. 10. Public Library of Science, p. e1003721, 2014.
B. R Fenwick, Orellana, L., Esteban-Martín, S., Orozco, M., and Salvatella, X., Correlated motions are a fundamental property of β-sheets., Nat Commun, vol. 5. p. 4070, 2014.
I. Rivalcoba, DeGyves, O., Rudomin, I., and Pelechano, N., Coupling pedestrians with a simulated virtual crowd, GRAPP 2014. SciTePress, Lisboa, Portugal, pp. 312–321, 2014.
Coupling Protein Dynamics with Active Site Chemistry: a MM and QM tale, ICPP8 International Conference on Porphyrins and Phtalocyanines, Istanbul, Turkey. 2014.
V. Guallar, Coupling Protein Dynamics with Active Site Chemistry: a MM and QM tale, ICPP8 International Conference on Porphyrins and Phtalocyanines, Istanbul, Turkey. 2014.
J. Carlos Rui Luque, CPU Accounting in Multi-Threaded Processors, 2014.
A. Miranda and Cortes, T., CRAID: Online RAID Upgrades using Dynamic Hot Data Reorganization, 12th USENIX Conference on File and Storage Technologies. Santa Clara, CA, United States, 2014.
V. Puzyrev, Queralt, P., Ledo, J., Vilamajó, E., Marcuello, A., de la Puente, J., and Cela, J. M., CSEM monitoring of a CO2 reservoir imaged by MT, 76th EAGE Conference & Exhibition - Workshops. 2014.
E. Sandes, Miranda, G., de Melo, A. C. M. Alve, Martorell, X., and Ayguadé, E., CUDAlign 3.0: Parallel Biological Sequence Comparison in Large GPU Clusters, 14th IEEE/ACM International Symposium on Cluster, Cloud and Grid Computing. IEEE, Chicago, IL, United States, pp. 160–169, 2014.
V. Gajinov, Eric, I., Stipic, S., Unsal, O., Ayguadé, E., and Cristal, A., DaSH: A Benchmark for Hybrid Dataflow and Shared Memory Programming Models, ACM International Conference on Computing Frontiers. ACM, Cagliari, Italy, 2014.
E. Di Tomaso, Schutgens, N., Oriol, J., and Markomanolis, G. S., Data assimilation enhancement of a chemical transport model: a dust forecast application, Proc. 2014 EUMETSAT Meteorological Satellite Conference. Proc. 2014 EUMETSAT Meteorological Satellite Conference, Geneva (Switzerland), 22-26 September, 2014.

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