Publications

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2012
Barbany, M., Morata, J., Meyer, T., Lois, S., Orozco, M. & de la Cruz, X. Characterization of the impact of alternative splicing on protein dynamics: the cases of glutathione S-transferase and ectodysplasin-A isoforms. Proteins 80, 2235-49 (2012).
2010
Meyer, T., D'Abramo, M., Hospital, A., Rueda, M., Ferrer-Costa, C., Pérez, A., Carrillo, O., Fenollosa, C., Perchevsky, D., Gelpí, J.L. & Orozco, M. MoDEL (Molecular Dynamics Extended Library). A database of atomistic molecular dynamics simulations. (2010).at <http://www.cell.com/structure/abstract/S0969-2126(10)00353-9>
Meyer, T., D'Abramo, M., Hospital, A., Rueda, M., Ferrer-Costa, C., Pérez, A., Carrillo, O., Camps, J., Fenollosa, C., Repchevsky, D., Gelpí, J.L. & Orozco, M. MoDEL (Molecular Dynamics Extended Library): a database of atomistic molecular dynamics trajectories. Structure (London, England : 1993) 18, 1399-409 (2010).
2009
Meyer, T., de la Cruz, X. & Orozco, M. An atomistic view to the gas phase proteome. (2009).at <http://www.cell.com/structure/abstract/S0969-2126(08)00430-9>
Emperador, A., Meyer, T. & Orozco, M. Protein flexibility from discrete molecular dynamics simulations using quasi-physical potentials. (2009).at <http://onlinelibrary.wiley.com/doi/10.1002/prot.22563/abstract>
D'Abramo, M., Meyer, T., Bernadó, P., Fernández-Recio, J. & Orozco, M. On the use of low resolution data to improve structure predictions of proteins and protein complexes. (2009).at <http://pubs.acs.org/doi/abs/10.1021/ct900305m>
2008
Emperador, A., Meyer, T. & Orozco, M. United-atom discrete molecular dynamics of proteins using physics-based potentials. (2008).at <http://pubs.acs.org/doi/abs/10.1021/ct8003832>
2007
Rueda, M., Ferrer, C., Meyer, T., Pérez, A., Camps, J., Hospital, A., Gelpí, J.L. & Orozco, M. A consensous view to Protein Dynamics. (2007).
2006
Noy, A., Meyer, T., Rueda, M., Ferrer, C., Valencia, A., Pérez, A., de la Cruz, X., López-Bes, J.M., Luque, F.J. & Orozco, M. Datamining of molecular dynamics trajectories of nucleic acids. (2006).
Meyer, T., Ferrer-Costa, C., Pérez, A., Rueda, M., Bidon-Chanal, A., Luque, F.J., Laughton, C. & Orozco, M. Essential Dyanmics: A Tool for Efficient Trajectory Compression and Management. (2006).
Talavera, D., Morreale, A., Hospital, A., Ferrer-Costa, C., Gelpí, J.L., de la Cruz, X., Meyer, T., Soliva, R., Luque, F.J. & Orozco, M. A fast method for the determination of fractional contributions to solvation in proteins. (2006).at <http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=pubmed&cmd=Retrieve&dopt=AbstractPlus&list_uids=17001031&query_hl=9&itool=pubmed_DocSum>
2005
Morreale, A., de la Cruz, X., Meyer, T., Gelpí, J.L., Luque, F.J. & Orozco, M. Partition of protein solvation into group contributions from molecular dynamics simulations. (2005).at <http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15517587&query_hl=1&itool=pubmed_DocSum>
2004
Morreale, A., de la Cruz, X., Meyer, T., Gelpí, J.L., Luque, F.J. & Orozco, M. Linear response theory: an alternative to PB and GB methods for the analysis of molecular dynamics trajectories?. (2004).at <http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15382247&query_hl=1&itool=pubmed_DocSum>