Alfonso Valencia

2021

• ELIXIR‐EXCELERATE: establishing Europe's data infrastructure for the life science research of the future

  The EMBO Journal

  J. Harrow, J. Hancock, N. Blomberg, N. Blomberg, S. Brunak, S. Capella-Gutierrez, C. Durinx, C. T. Evelo, C. Goble, I. Gut, J. Ison, T. Keane, B. Leskošek, L. Matyska, J. McEntyre, C. Miguel, A. Navarro, S. Newhouse, T. Nyrönen, P. Palagi, B. Persson, C. Pommier, J. Rambla, M. Roos, G. Rustici, A. Smith, A. Valencia, C. van Gelder, J. Vondrášek, N. Peder Willassen, J. Arenas, H. Parkinson, R. D. Finn, S. Beltran, L. Matalonga, H. Hurst, P. Kersey, I. Lappalainen, P. Kahlem, G. Saunders, S. Sarntivijai, R. Drysdale, J. Tedds, J. Lanfear, and J. Harrow
• A catalogue of 863 Rett-syndrome-causing MECP2 mutations and lessons learned from data integration

  Scientific Data

  F. Ehrhart, A. Jacobsen, M. Rigau, M. Bosio, R. Kaliyaperumal, J. F. J. Laros, E. L. Willighagen, A. Valencia, M. Roos, S. Capella-Gutierrez, L. M. G. Curfs, and C. T. Evelo
• COVID19 Disease Map, a computational knowledge repository of virus–host interaction mechanisms

  Molecular Systems Biology

  M. Ostaszewski, A. Niarakis, A. Mazein, I. Kuperstein, R. Phair, A. Orta‐Resendiz, V. Singh, S. Sadat Aghamiri, M. Luis Acencio, E. Glaab, et al.
• Systems biology at the giga-scale: Large multiscale models of complex, heterogeneous multicellular systems

  Current Opinion in Systems Biology

  A. Montagud, M. Ponce-de-Leon, and A. Valencia
• BioFVM-X: An MPI+OpenMP 3-D Simulator for Biological Systems

  Lecture Notes in Computer Science

  G. Saxena, M. Ponce-de-Leon, A. Montagud, D. Vicente Dorca, and A. Valencia
• COVID-19 Flow-Maps an open geographic information system on COVID-19 and human mobility for Spain

  Scientific Data

  M. Ponce De Leon, J. del Valle, J. Maria Fernández, M. Bernardo, D. Cirillo, J. Sánchez-Valle, M. Smith, S. Capella-Gutierrez, T. Gullón, and A. Valencia
• DOME: recommendations for supervised machine learning validation in biology

  Nature Methods

  I. Walsh, D. Fishman, D. Garcia-Gasulla, T. Titma, G. Pollastri, E. Capriotti, R. Casadio, S. Capella-Gutierrez, D. Cirillo, A. Del Conte, A. C. Dimopoulos, V. Dominguez Del Angel, J. Dopazo, P. Fariselli, J. Maria Fernández, F. Huber, A. Kreshuk, T. Lenaerts, P. Luigi Martelli, A. Navarro, P. Ó. Broin, J. Piñero, D. Piovesan, M. Reczko, F. Ronzano, V. Satagopam, C. Savojardo, V. Spiwok, M. Antonio Tangaro, G. Tartari, D. Salgado, A. Valencia, F. Zambelli, J. Harrow, F. E. Psomopoulos, and S. C. E. Tosatto
• MAX mutant small-cell lung cancers exhibit impaired activities of MGA-dependent noncanonical polycomb repressive complex

  Proceedings of the National Academy of Sciences

  P. Llabata, M. Torres-Diz, A. Gomez, L. Tomas-Daza, O. A. Romero, J. Grego-Bessa, P. Llinas-Arias, A. Valencia, M. Esteller, B. M. Javierre, X. Zhang, and M. Sanchez-Cespedes
• Mutational mechanisms shaping the coding and noncoding genome of germinal center derived B-cell lymphomas

  Leukemia

  D. Hübschmann, K. Kleinheinz, R. Wagener, S. H. Bernhart, C. López, U. H. Toprak, S. Sungalee, N. Ishaque, H. Kretzmer, M. Kreuz, S. M. Waszak, N. Paramasivam, O. Ammerpohl, S. M. Aukema, R. Beekman, A. K. Bergmann, M. Bieg, H. Binder, A. Borkhardt, C. Borst, B. Brors, P. Bruns, E. Carrillo d Pau, A. Claviez, G. Doose, A. Haake, D. Karsch, S. Haas, M-L. Hansmann, J. I. Hoell, V. Hovestadt, B. Huang, M. Hummel, C. Jäger-Schmidt, J. N. A. Kerssemakers, J. O. Korbel, D. Kube, C. Lawerenz, D. Lenze, J. H. A. Martens, G. Ott, B. Radlwimmer, E. Reisinger, J. Richter, D. Rico, P. Rosenstiel, A. Rosenwald, M. Schillhabel, S. Stilgenbauer, P. F. Stadler, J. I. Martin-Subero, M. Szczepanowski, G. Warsow, M. A. Weniger, M. Zapatka, A. Valencia, H. G. Stunnenberg, P. Lichter, P. Möller, M. Loeffler, R. Eils, W. Klapper, S. Hoffmann, L. Trümper, R. Küppers, M. Schlesner, and R. Siebert
• The eTRANSAFE Project on Translational Safety Assessment through Integrative Knowledge Management: Achievements and Perspectives

  Pharmaceuticals

  F. Pognan, T. Steger-Hartmann, C. Díaz, N. Blomberg, F. Bringezu, K. Briggs, G. Callegaro, S. Capella-Gutierrez, E. Centeno, J. Corvi, P. Drew, W. C. Drewe, J. M. Fernández, L. I. Furlong, E. Guney, J. A. Kors, M. Angel Mayer, M. Pastor, J. Piñero, J. Manuel Ramírez-Anguita, F. Ronzano, P. Rowell, J. Saüch-Pitarch, A. Valencia, B. van de Water, J. van der Lei, E. van Mulligen, and F. Sanz