Alfonso Valencia

2021

• Artificial Intelligence–Aided Precision Medicine for COVID-19: Strategic Areas of Research and Development

  Journal of Medical Internet Research

  E. Santus, N. Marino, D. Cirillo, E. Chersoni, A. Montagud, A. Santuccion Chadha, A. Valencia, K. Hughes, and C. Lindvall
• Artificial intelligence in cancer research: learning at different levels of data granularity

  Molecular Oncology

  D. Cirillo, I. Núñez-Carpintero, and A. Valencia
• Simulating SARS-CoV-2 epidemics by region-specific variables and modeling contact tracing app containment

  Nature Digital Medicine

  A. Ferrari, E. Santus, D. Cirillo, M. Ponce De Leon, N. Marino, M. Teresa Ferretti, A. Santuccion Chadha, N. Mavridis, and A. Valencia

2020

• COVID-19 and beyond: a call for action and audacious solidarity to all the citizens and nations, it is humanity’s fight

  F1000Research

  C. Auffray, R. Balling, N. Blomberg, M. C. Bonaldo, B. Boutron, S. Brahmachari, C. Brechot, A. Cesario, S-J. Chen, K. Clément, D. Danilenko, A. Di Meglio, A. Gelemanović, C. Goble, T. Gojobori, J. D. Goldman, M. Goldman, Y-K. Guo, J. Heath, L. Hood, P. Hunter, L. Jin, H. Kitano, B. Knoppers, D. Lancet, C. Larue, M. Lathrop, M. Laville, A. B. Lindner, A. Magnan, A. Metspalu, E. Morin, L. F. P. Ng, L. Nicod, D. Noble, L. Nottale, H. Nowotny, T. Ochoa, I. N. Okeke, T. Oni, P. Openshaw, M. Oztürk, S. Palkonen, J. T. Paweska, C. Pison, M. H. Polymeropoulos, C. Pristipino, U. Protzer, J. Roca, D. Rozman, M. Santolini, F. Sanz, G. Scambia, E. Segal, I. Serageldin, M. Bento Soares, P. Sterk, S. Sugano, G. Superti-Furga, D. Supple, J. Tegner, M. Uhlen, A. Urbani, A. Valencia, V. Valentini, S. van der Werf, M. Vinciguerra, O. Wolkenhauer, and E. Wouters
• Classification in biological networks with hypergraphlet kernelsAbstractMotivationResultsAvailability and implementationSupplementary information

  Bioinformatics

  J. Lugo-Martinez, D. Zeiberg, T. Gaudelet, N. Malod-Dognin, N. Pržulj, and P. Radivojac
• Unveiling new disease, pathway, and gene associations via multi-scale neural network

  PLOS ONE

  T. Gaudelet, N. Malod-Dognin, J. Sánchez-Valle, V. Pancaldi, A. Valencia, and N. Pržulj
• Sex differences in oncogenic mutational processes

  Nature Communications

  C. H. Li, S. D. Prokopec, R. X. Sun, F. Yousif, N. Schmitz, P. C. Boutros, and
• Retrospective evaluation of whole exome and genome mutation calls in 746 cancer samplesAbstract

  Nature Communications

  M. H. Bailey, W. U. Meyerson, L. Jonathan Dursi, L-B. Wang, G. Dong, W-W. Liang, A. Weerasinghe, S. Li, Y. Li, S. Kelso, G. Saksena, K. Ellrott, M. C. Wendl, D. A. Wheeler, G. Getz, J. T. Simpson, M. B. Gerstein, and L. Ding
• How to Design AI-Driven Clinical Trials in Nuclear Medicine

  Seminars in Nuclear Medicine

  G. Delso, D. Cirillo, J. D. Kaggie, A. Valencia, U. Metser, and P. Veit-Haibach
• GOPHER, an HPC Framework for Large Scale Graph Exploration and Inference

  High Performance Computing. ISC High Performance 2020. Lecture Notes in Computer Science

  M. JosepFabregó, X. Teruel, V. Gimenez-Abalos, D. Cirillo, D. Garcia-Gasulla, S. Alvarez-Napagao, M. Garcia-Gasulla, E. Ayguadé, and A. Valencia