Alfonso Valencia

2022

• Clinical course impacts early kinetics,magnitude, and amplitude of SARS-CoV-2 neutralizing antibodies beyond 1 year after infection

  Cell Reports Medicine

  E. Pradenas, B. Trinité, V. Urrea, S. Marfil, F. Tarrés-Freixas, R. Ortiz, C. Rovirosa, J. Rodon, J. Vergara-Alert, J. Segalés, V. Guallar, A. Valencia, N. Izquierdo-Useros, M. Noguera-Julian, J. Carrillo, R. Paredes, L. Mateu, A. Chamorro, R. Toledo, M. Massanella, B. Clotet, and J. Blanco
• ExTRI: Extraction of transcription regulation interactions from literature

  Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms

  M. Vazquez, M. Krallinger, F. Leitner, M. Kuiper, A. Valencia, and A. Laegreid
• Detection of oncogenic and clinically actionable mutations in cancer genomes critically depends on variant calling tools

  Bioinformatics

  C. A. Garcia-Prieto, F. Martínez-Jiménez, A. Valencia, and E. Porta-Pardo
• The structural coverage of the human proteome before and after AlphaFold

  PLoS computational biology

  E. Porta-Pardo, V. Ruiz-Serra, S. Valentini, and A. Valencia
• The structural coverage of the human proteome before and after AlphaFold

  PLoS computational biology

  E. Porta-Pardo, V. Ruiz-Serra, S. Valentini, and A. Valencia
• Digital biomarkers and sex impacts in Alzheimer’s disease management — potential utility for innovative 3P medicine approach

  EPMA Journal

  R. L. Harms, A. Ferrari, I. B. Meier, J. Martinkova, E. Santus, N. Marino, D. Cirillo, S. Mellino, S. Catuara Solarz, I. Tarnanas, C. Szoeke, J. Hort, A. Valencia, M. Teresa Ferretti, A. Seixas, and A. Santuccion Chadha
• Patient-specific Boolean models of signalling networks guide personalised treatments

  eLife

  A. Montagud, J. Béal, L. Tobalina, P. Traynard, V. Subramanian, B. Szalai, R. Alföldi, L. Puskás, A. Valencia, E. Barillot, J. Saez-Rodriguez, and L. Calzone

2021

• Lecture Notes in Computer ScienceComputational Methods in Systems BiologyBioFVM-X: An MPI+OpenMP 3-D Simulator for Biological SystemsAbstract

  G. Saxena, M. Ponce-de-Leon, A. Montagud, D. Vicente Dorca, and A. Valencia
• Assessing the accuracy of contact and distance predictions inAbstract

  Proteins: Structure, Function, and Bioinformatics

  V. Ruiz‐Serra, C. Pontes, E. Milanetti, A. Kryshtafovych, R. Lepore, and A. Valencia
• Pigs are not susceptible to SARS‐CoV‐2 infection but are a model for viral immunogenicity studies

  Transboundary and Emerging Diseases

  J. Vergara‐Alert, J. Rodon, J. Carrillo, N. Te, N. Izquierdo‐Useros, M. Luisa Rodr de la Concepción, C. Ávila‐Nieto, V. Guallar, A. Valencia, G. Cantero, J. Blanco, B. Clotet, A. Bensaid, and J. Segalés