Alfonso Valencia

2022

• A structural biology community assessment of AlphaFold2 applicationsAbstract

  Nature Structural & Molecular Biology

  M. Akdel, D. E. V. Pires, E. Porta Pardo, J. Jänes, A. O. Zalevsky, B. Mészáros, P. Bryant, L. L. Good, R. A. Laskowski, G. Pozzati, A. Shenoy, W. Zhu, P. Kundrotas, V. Ruiz Serra, C. H. M. Rodrigues, A. S. Dunham, D. Burke, N. Borkakoti, S. Velankar, A. Frost, J. Basquin, K. Lindorff-Larsen, A. Bateman, A. V. Kajava, A. Valencia, S. Ovchinnikov, J. Durairaj, D. B. Ascher, J. M. Thornton, N. E. Davey, A. Stein, A. Elofsson, T. I. Croll, and P. Beltrao
• 3D chromatin connectivity underlies replication origin efficiency in mouse embryonic stem cellsAbstract

  Nucleic Acids Research

  K. Jodkowska, V. Pancaldi, M. Rigau, R. Almeida, J. M. Fernández-Justel, O. Graña-Castro, S. Rodríguez-Acebes, M. Rubio-Camarillo, E. Carrillo-d Pau, D. Pisano, F. Al-Shahrour, A. Valencia, M. Gómez, and J. Méndez
• Sex and gender bias in natural language processing

  Elsevier Academic Press

  D. Cirillo, H. Gonen, E. Santus, A. Valencia, M. R. Costa-jussà, and M. Villegas
• Pretrained biomedical language models for clinical NLP in Spanish

  Proceedings of the 21st Workshop on Biomedical Language Processing

  C. PioCarrino, J. Llop-Palao, M. Pàmies, A. Gutiérrez-Fandiño, J. Armengol-Estapé, J. Silveira-Ocampo, A. Valencia, A. Gonzalez-Agirre, and M. Villegas
• Optimizing Dosage-Specific Treatments in a Multi-Scale Model of a Tumor

  Frontiers in Molecular Biosciences

  M. Ponce-de-Leon, A. Montagud, C. Akasiadis, J. Schreiber, T. Ntiniakou, and A. Valencia
• Design and methodological characteristics of studies using observational routinely collected health data for investigating the link between cancer and neurodegenerative diseases: Protocol for a meta-research study

  BMJ Open

  F. Catalá-López, J. A. Driver, M. J. Page, B. Hutton, M. Ridao, C. Berrozpe-Villabona, A. Alonso-Arroyo, C. A. Fraga-Medín, E. Bernal-Delgado, A. Valencia, and R. Tabarés-Seisdedos
• Heterogeneous Infectivity and Pathogenesis of SARS-CoV-2 Variants Beta, Delta and Omicron in Transgenic K18-hACE2 and Wildtype Mice

  Frontiers in Microbiology

  F. Tarrés-Freixas, B. Trinité, A. Pons-Grífols, M. Romero-Durana, E. Riveira-Muñoz, C. Ávila-Nieto, M. Pérez, E. Garcia-Vidal, D. Perez-Zsolt, J. Muñoz-Basagoiti, D. Raïch-Regué, N. Izquierdo-Useros, C. Andrés, A. Antón, T. Pumarola, I. Blanco, M. Noguera-Julian, V. Guallar, R. Lepore, A. Valencia, V. Urrea, J. Vergara-Alert, B. Clotet, E. Ballana, J. Carrillo, J. Segalés, and J. Blanco
• Evaluating the policy of closing bars and restaurants in Cataluña and its effects on mobility and COVID19 incidence

  Scientific Reports

  M. Smith, M. Ponce-de-Leon, and A. Valencia
• Parallel model exploration for tumor treatment simulations

  Computational Intelligence

  C. Akasiadis, M. Ponce‐de‐Leon, A. Montagud, E. Michelioudakis, A. Atsidakou, E. Alevizos, A. Artikis, A. Valencia, and G. Paliouras
• Mortality in Persons With Autism Spectrum Disorder or Attention-Deficit/Hyperactivity Disorder

  JAMA Pediatrics

  F. Catalá-López, B. Hutton, M. J. Page, J. A. Driver, M. Ridao, A. Alonso-Arroyo, A. Valencia, D. Macías Saint-Gerons, and R. Tabarés-Seisdedos