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2011

Prediction of protein binding sites and hot spots

WIREs Comput. Mol. Sci.

J. Fernández-Recio
Community-wide assessment of protein-interface modeling suggests improvements to design methodology.

Journal of molecular biology

S. J. Fleishman, T. A. Whitehead, E-M. Strauch, J. E. Corn, S. Qin, H-X. Zhou, J. C. Mitchell, O. N. A. Demerdash, M. Takeda-Shitaka, G. Terashi, I. H. Moal, X. Li, P. A. Bates, M. Zacharias, H. Park, J-su. Ko, H. Lee, C. Seok, T. Bourquard, J. Bernauer, A. Poupon, J. Azé, S. Soner, S K. Ovali, P. Ozbek, N B. Tal, T. Haliloglu, H. Hwang, T. Vreven, B. G. Pierce, Z. Weng, L. Pérez-Cano, C. Pons, J. Fernández-Recio, F. Jiang, F. Yang, X. Gong, L. Cao, X. Xu, B. Liu, P. Wang, C. Li, C. Wang, C. H. Robert, M. Guharoy, S. Liu, Y. Huang, L. Li, D. Guo, Y. Chen, Y. Xiao, N. London, Z. Itzhaki, O. Schueler-Furman, Y. Inbar, V. Potapov, M. Cohen, G. Schreiber, Y. Tsuchiya, E. Kanamori, D. M. Standley, H. Nakamura, K. Kinoshita, C. M. Driggers, R. G. Hall, J. L. Morgan, V. L. Hsu, J. Zhan, Y. Yang, Y. Zhou, P. L. Kastritis, A. M. J. J. Bonvin, W. Zhang, C. J. Camacho, K. P. Kilambi, A. Sircar, J. J. Gray, M. Ohue, N. Uchikoga, Y. Matsuzaki, T. Ishida, Y. Akiyama, R. Khashan, S. Bush, D. Fouches, A. Tropsha, J. Esquivel-Rodríguez, D. Kihara, B. P. Stranges, R. Jacak, B. Kuhlman, S-Y. Huang, X. Zou, S. J. Wodak, J. Janin, and D. Baker
LRR conservation mapping to predict functional sites within protein leucine-rich repeat domains.

PloS one

L. Helft, V. Reddy, X. Chen, T. Koller, L. Federici, J. Fernández-Recio, R. Gupta, and A. Bent
pyDockCG: new coarse-grained potential for protein-protein docking.

The journal of physical chemistry. B

A. Solernou, and J. Fernández-Recio
A Portable Implementation of the Integral Histogram in StarSs

Proceedings of the SC11 conference

P. Bellens, K. Palaniappan, R. M. Badia, G. Seetharaman, and J. Labarta
Making the Best of Temporal Locality: Just-in-Time Renaming and Lazy Write-Back on the Cell/B.E.

International Journal of High Performance Computing Applications

P. Bellens, J. M. Pérez, R. M. Badia, and J. Labarta
Extracting the optimal sampling frequency of applications using spectral analysis

Concurrency and Computation: Practice and Experience

M. Casas, H. Servat, R. M. Badia, and J. Labarta
A Study of Speculative Distributed Scheduling on the Cell/B.E.

proceedings of the 25th IEEE International Parallel & Distributed Processing Symposium

P. Bellens, J. M. Pérez, R. M. Badia, and J. Labarta
Multiparticle Collision Dynamics on the Cell Broadband Engine using CellSs

Proc. of the Second International Conference on Parallel, Distributed, Grid and Cloud Computing for Engineering

A. Schiller, G. Sutmann, L. Martinell, P. Bellens, and R. M. Badia
Parallel implementation of the integral histogram

Proceedings of the 13th international conference on Advanced concepts for intelligent vision systems

P. Bellens, K. Palaniappan, R. M. Badia, G. Seetharaman, and J. Labarta

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