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2022

Pretrained biomedical language models for clinical NLP in Spanish

Proceedings of the 21st Workshop on Biomedical Language Processing

C. PioCarrino, J. Llop-Palao, M. Pàmies, A. Gutiérrez-Fandiño, J. Armengol-Estapé, J. Silveira-Ocampo, A. Valencia, A. Gonzalez-Agirre, and M. Villegas
Optimizing Dosage-Specific Treatments in a Multi-Scale Model of a Tumor

Frontiers in Molecular Biosciences

M. Ponce-de-Leon, A. Montagud, C. Akasiadis, J. Schreiber, T. Ntiniakou, and A. Valencia
Design and methodological characteristics of studies using observational routinely collected health data for investigating the link between cancer and neurodegenerative diseases: Protocol for a meta-research study

BMJ Open

F. Catalá-López, J. A. Driver, M. J. Page, B. Hutton, M. Ridao, C. Berrozpe-Villabona, A. Alonso-Arroyo, C. A. Fraga-Medín, E. Bernal-Delgado, A. Valencia, and R. Tabarés-Seisdedos
Heterogeneous Infectivity and Pathogenesis of SARS-CoV-2 Variants Beta, Delta and Omicron in Transgenic K18-hACE2 and Wildtype Mice

Frontiers in Microbiology

F. Tarrés-Freixas, B. Trinité, A. Pons-Grífols, M. Romero-Durana, E. Riveira-Muñoz, C. Ávila-Nieto, M. Pérez, E. Garcia-Vidal, D. Perez-Zsolt, J. Muñoz-Basagoiti, D. Raïch-Regué, N. Izquierdo-Useros, C. Andrés, A. Antón, T. Pumarola, I. Blanco, M. Noguera-Julian, V. Guallar, R. Lepore, A. Valencia, V. Urrea, J. Vergara-Alert, B. Clotet, E. Ballana, J. Carrillo, J. Segalés, and J. Blanco
Evaluating the policy of closing bars and restaurants in Cataluña and its effects on mobility and COVID19 incidence

Scientific Reports

M. Smith, M. Ponce-de-Leon, and A. Valencia
Mortality in Persons With Autism Spectrum Disorder or Attention-Deficit/Hyperactivity Disorder

JAMA Pediatrics

F. Catalá-López, B. Hutton, M. J. Page, J. A. Driver, M. Ridao, A. Alonso-Arroyo, A. Valencia, D. Macías Saint-Gerons, and R. Tabarés-Seisdedos
Clinical course impacts early kinetics,magnitude, and amplitude of SARS-CoV-2 neutralizing antibodies beyond 1 year after infection

Cell Reports Medicine

E. Pradenas, B. Trinité, V. Urrea, S. Marfil, F. Tarrés-Freixas, R. Ortiz, C. Rovirosa, J. Rodon, J. Vergara-Alert, J. Segalés, V. Guallar, A. Valencia, N. Izquierdo-Useros, M. Noguera-Julian, J. Carrillo, R. Paredes, L. Mateu, A. Chamorro, R. Toledo, M. Massanella, B. Clotet, and J. Blanco
ExTRI: Extraction of transcription regulation interactions from literature

Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms

M. Vazquez, M. Krallinger, F. Leitner, M. Kuiper, A. Valencia, and A. Laegreid
Detection of oncogenic and clinically actionable mutations in cancer genomes critically depends on variant calling tools

Bioinformatics

C. A. Garcia-Prieto, F. Martínez-Jiménez, A. Valencia, and E. Porta-Pardo
The structural coverage of the human proteome before and after AlphaFold

PLoS computational biology

E. Porta-Pardo, V. Ruiz-Serra, S. Valentini, and A. Valencia

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