Publications

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2022

Chromatin profiling reveals heterogeneity in clinical isolates of the human pathogen Aspergillus fumigatus

PLOS Genetics

A. CristinaColabardini, F. Wang, Z. Miao, L. Pardeshi, C. Valero, P. Alves de Castro, D. Yuri Akiyama, K. Tan, L. Czamanski Nora, R. Silva-Rocha, M. Marcet-Houben, T. Gabaldón, T. Fill, K. Ho Wong, and G. H. Goldman
Transcriptome and proteome profiling reveals complex adaptations of Candida parapsilosis cells assimilating hydroxyaromatic carbon sources

PLOS Genetics

A. Cillingová, R. Tóth, A. Mojáková, I. Zeman, R. Vrzoňová, B. Siváková, P. Baráth, M. Neboháčová, Z. Klepcová, F. Brázdovič, H. Lichancová, V. Hodorová, B. Brejová, T. Vinař, S. Mutalová, V. Vozáriková, G. Mutti, Ľ. Tomáška, A. Gácser, T. Gabaldón, and J. Nosek
Multiple Hybridization Events Punctuate the Evolutionary Trajectory of Malassezia furfur

mBio

B. Theelen, V. Mixão, G. Ianiri, J. Pei Zhen Goh, J. Dijksterhuis, J. Heitman, T. L. Dawson, T. Gabaldón, and T. Boekhout
Benzylic Dehydroxylation of Echinocandin Antifungal Drugs Restores Efficacy against Resistance Conferred by Mutated Glucan Synthase

Journal of the American Chemical Society

D. Logviniuk, Q. Z. Jaber, R. Dobrovetsky, N. Kozer, E. Ksiezopolska, T. Gabaldón, S. Carmeli, and M. Fridman
Chromosome-level assembly, annotation and phylome of Pelobates cultripes, the western spadefoot toad

DNA Research

H. ChristophLiedtke, F. Cruz, J. Gómez-Garrido, D. Fuentes Palacios, M. Marcet-Houben, M. Gut, T. Alioto, T. Gabaldón, and I. Gomez-Mestre
Using genomics to understand the mechanisms of virulence and drug resistance in fungal pathogens

Biochemical Society Transactions

M. ÀngelSchikora-Tamarit, and T. Gabaldón
Evolutionary analyses of genes in Echinodermata offer insights towards the origin of metazoan phyla

Genomics

S. Foley, A. Vlasova, M. Marcet-Houben, T. Gabaldón, and V. F. Hinman
Secondary structure prediction of long noncoding RNA: review and experimental comparison of existing approaches

Briefings in Bioinformatics

L. A. Bugnon, A. A. Edera, S. Prochetto, M. Gerard, J. Raad, E. Fenoy, M. Rubiolo, U. Chorostecki, T. Gabaldón, F. Ariel, L. E. Di Persia, D. H. Milone, and G. Stegmayer
Patterns of Genomic Variation in the Opportunistic Pathogen Candida glabrata Suggest the Existence of Mating and a Secondary Association with Humans

Current Biology

L. Carreté, E. Ksiezopolska, C. Pegueroles, E. Gómez-Molero, E. Saus, S. Iraola-Guzmán, D. Loska, O. Bader, C. Fairhead, and T. Gabaldón
Citizen-science reveals changes in the oral microbiome in Spain through age and lifestyle factors

npj Biofilms and Microbiomes

J. R. Willis, E. Saus, S. Iraola-Guzmán, E. Ksiezopolska, L. Cozzuto, L. A. Bejarano, N. Andreu-Somavilla, M. Alloza-Trabado, A. Blanco, A. Puig-Sola, E. Broglio, C. Carolis, J. Ponomarenko, J. Hecht, and T. Gabaldón

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