Publications

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2024

Multi-scale signaling and tumor evolution in high-grade gliomas

Cancer Cell

J. Liu, S. Cao, K. J. Imbach, M. A. Gritsenko, T-S. M. Lih, J. E. Kyle, T. M. Yaron-Barir, Z. A. Binder, Y. Li, I. Strunilin, et al.

2023

Publisher Correction: Butler enables rapid cloud-based analysis of thousands of human genomes

Nature Biotechnology

S. Yakneen, S. M. Waszak, S. Yakneen, B. Aminou, J. Bartolome, K. A. Boroevich, R. Boyce, A. N. Brooks, A. Buchanan, I. Buchhalter, et al.

2020

Retrospective evaluation of whole exome and genome mutation calls in 746 cancer samples

Nature Communications

M. H. Bailey, W. U. Meyerson, L. Jonathan Dursi, L-B. Wang, G. Dong, W-W. Liang, A. Weerasinghe, S. Li, Y. Li, S. Kelso, G. Saksena, K. Ellrott, M. C. Wendl, D. A. Wheeler, G. Getz, J. T. Simpson, M. B. Gerstein, and L. Ding

2019

The Immune Landscape of Cancer

Immunity

V. Thorsson, D. L. Gibbs, S. D. Brown, D. Wolf, D. S. Bortone, T-H. Ou Yang, E. Porta-Pardo, G. F. Gao, C. L. Plaisier, J. A. Eddy, et al.

2018

Type 2 diabetes genetic loci informed by multi-trait associations point to disease mechanisms and subtypes: A soft clustering analysis

PLOS Medicine

M. S. Udler, J. Kim, M. von Grotthuss, S. Bonàs-Guarch, J. B. Cole, J. Chiou, M. Boehnke, M. Laakso, G. Atzmon, B. Glaser, J. M. Mercader, K. Gaulton, J. Flannick, G. Getz, and J. C. Florez
The Immune Landscape of Cancer

Immunity

V. Thorsson, D. L. Gibbs, S. D. Brown, D. Wolf, D. S. Bortone, T-H. Ou Yang, E. Porta-Pardo, G. F. Gao, C. L. Plaisier, J. A. Eddy, et al.
Perspective on Oncogenic Processes at the End of the Beginning of Cancer Genomics

Cell

L. Ding, M. H. Bailey, E. Porta-Pardo, V. Thorsson, A. Colaprico, D. Bertrand, D. L. Gibbs, A. Weerasinghe, K-lin. Huang, C. Tokheim, et al.
The Immune Landscape of Cancer

Immunity

V. Thorsson, D. L. Gibbs, S. D. Brown, D. Wolf, D. S. Bortone, T-H. Ou Yang, E. Porta-Pardo, G. F. Gao, C. L. Plaisier, J. A. Eddy, et al.
Perspective on Oncogenic Processes at the End of the Beginning of Cancer Genomics

Cell

L. Ding, M. H. Bailey, E. Porta-Pardo, V. Thorsson, A. Colaprico, D. Bertrand, D. L. Gibbs, A. Weerasinghe, K-lin. Huang, C. Tokheim, et al.
Comprehensive Characterization of Cancer Driver Genes and Mutations

Cell

M. H. Bailey, C. Tokheim, E. Porta-Pardo, S. Sengupta, D. Bertrand, A. Weerasinghe, A. Colaprico, M. C. Wendl, J. Kim, B. Reardon, et al.

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