Characterisation of the structure and function of a member of the L-Amino acid Transporter (LAT) family

24 April 2019

The work is a collaboration between IRB Barcelona, CIBERER, IBMB-CSIC and the Barcelona Supercomputing Center.

Mutations in L-amino acid transporters (LATs) can lead to a wide range of conditions, such as autism, hearing loss and aminoacidurias.

Published in the journal Nature Communications, this study presents key data on how amino acids bind to these transporters.

In humans, there are more than 50 types of amino acid transporters, which are responsible for the cellular uptake of amino acids and for regulating the intra- and extra-cellular balance of these molecules. Mutations in these transporters are associated with a variety of diseases. However, in spite of the importance of these molecules, little is known about how they work. Scientists at the Institute for Research in Biomedicine (IRB Barcelona) have now characterised the structure of a member of the LAT family.

LATs form a family that includes various kinds of amino acid transporter and even even members in bacteria. Mutated LATs are associated with conditions as diverse as autism, age-related hearing loss, cystinuria and lysinuric protein intolerance.

Published in the journal Nature Communications, this study has focused on BasC, a LAT present in bacteria. “We have used BasC as a model because it shows structural and functional similarity to LATs in humans,” explainsManuel Palacín, head of the Amino Acid Transporters and Disease Lab at IRB Barcelona.

By analysing the structure and function of BasC, the first authors of this work, Ekaitz Errasti-Murugarren,Joana Fortand Paola Bartoccioni, postdoctoral fellows at IRB Barcelona, have identified the site at which amino acids bind to LATs and the mechanism underlying the interaction at both sides of the cell membrane.

“Knowing how LATs recognise the amino acids to be transported into the cell allows us to better understand their function and to decipher the molecular defects associated with various conditions. This knowledge will then help us to develop potential treatments,” comments Palacín, full professor at the Faculty of Biology at the University of Barcelona, and head of unit U731 of the Centro de Investigación Biomédica en Red de Enfermedades Raras (CIBERER).

In this collaboration between IRB Barcelona, CIBERER, IBMB-CSIC and the Barcelona Supercomputing Center, the researchers have characterised the structure of BasC by means of X-ray crystallography and using an antibody against this transporter. “The BasC antibodies that we developed provide an excellent tool through which to study the function of this transporter,” adds Palacín.

The study has been supported by the Ministry of Science, Innovation and Universities, La Fundació La Marató TV3, SIDRA Medicine (Qatar), CIBERER, the Catalan Government, INSTRUCT-ERIC (European Strategy Forum on Research Infrastructures, ESFRI) and the Research Foundation - Flanders (FWO).

Reference article:

Ekaitz Errasti-Murugarren, Joana Fort, Paola Bartoccioni, Lucía Díaz, Els Pardon, Xavier Carpena, Meritxell Espino-Guarch, Antonio Zorzano, Christine Ziegler, Jan Steyaert, Juan Fernández-Recio, Ignacio Fita and Manuel Palacín.

L-Amino acid Transporter structure and molecular bases for the asymmetry of substrate interaction

Nature Communications(2019) doi:10.1038/s41467-019-09837-z

Caption: Structure of the BasC transporter