Toni Gabaldon

2022

• Patterns of Genomic Variation in the Opportunistic Pathogen Candida glabrata Suggest the Existence of Mating and a Secondary Association with Humans

  Current Biology

  L. Carreté, E. Ksiezopolska, C. Pegueroles, E. Gómez-Molero, E. Saus, S. Iraola-Guzmán, D. Loska, O. Bader, C. Fairhead, and T. Gabaldón
• Citizen-science reveals changes in the oral microbiome in Spain through age and lifestyle factors

  npj Biofilms and Microbiomes

  J. R. Willis, E. Saus, S. Iraola-Guzmán, E. Ksiezopolska, L. Cozzuto, L. A. Bejarano, N. Andreu-Somavilla, M. Alloza-Trabado, A. Blanco, A. Puig-Sola, E. Broglio, C. Carolis, J. Ponomarenko, J. Hecht, and T. Gabaldón
• Genome analysis of five recently described species of the CUG-Ser clade uncovers Candida theae as a new hybrid lineage with pathogenic potential in the Candida parapsilosis species complex

  DNA Research

  V. Mixão, V. del Olmo, E. Hegedűsová, E. Saus, L. Pryszcz, A. Cillingová, J. Nosek, and T. Gabaldón
• Changes in the stool and oropharyngeal microbiome in obsessive-compulsive disorder

  Scientific Reports

  L. Domènech, J. Willis, M. Alemany-Navarro, M. Morell, E. Real, G. Escaramis, S. Bertolín, D. Sánchez Chinchilla, S. Balcells, C. Segalàs, X. Estivill, J. M. Menchón, T. Gabaldón, P. Alonso, and R. Rabionet
• Candidemia Among Coronavirus Disease 2019 Patients in Turkey Admitted to Intensive Care Units: A Retrospective Multicenter Study

  Open Forum Infectious Diseases

  A. Arastehfar, N. Ünal, T. Hoşbul, M. Alper Özarslan, A. Sultan Karakoyun, F. Polat, D. Fuentes, R. Gümral, T. Turunç, F. Daneshnia, D. S. Perlin, C. Lass-Florl, T. Gabaldón, M. Ilkit, and H. M Nguyen
• Trends in yeast diversity discovery

  Fungal Diversity

  T. Boekhout, A. S. Amend, F. El Baidouri, T. Gabaldón, J. Geml, M. Mittelbach, V. Robert, C. Shuhui Tan, B. Turchetti, D. Vu, Q-M. Wang, and A. Yurkov
• Lung microbiota predict invasive pulmonary aspergillosis and its outcome in immunocompromised patients

  Thorax

  A. Hérivaux, J. R. Willis, T. Mercier, K. Lagrou, S. M. Gonçalves, R. A. Gonçales, J. Maertens, A. Carvalho, T. Gabaldón, and C. Cunha
• The era of reference genomes in conservation genomics

  Trends in Ecology & Evolution

  G. Formenti, K. Theissinger, C. Fernandes, I. Bista, A. Bombarely, C. Bleidorn, C. Ciofi, A. Crottini, J. A. Godoy, J. Höglund, et al.

2021

• Ten Years of Collaborative Progress in the Quest for Orthologs

  Molecular Biology and Evolution

  B. Linard, I. Ebersberger, S. E. McGlynn, N. Glover, T. Mochizuki, M. Patricio, O. Lecompte, Y. Nevers, P. D. Thomas, T. Gabaldón, E. Sonnhammer, C. Dessimoz, I. Uchiyama, A. Altenhoff, A. Ouangraoua, A. Warwick Vesztrocy, B. Linard, C. Dessimoz, D. Szklarczyk, D. Durand, D. Emms, D. Moi, D. Thybert, E. Sonnhammer, E. Kriventseva, H. Tang, H. Chiba, I. Uchiyama, I. Ebersberger, J. Huerta-Cepas, J. Tomas Fernandez-Breis, J. A. Blake, L. Pryszcz, M-J. Martin, M. Marcet Houben, M. Patricio, M. Muffato, N. Glover, O. Lecompte, P. D. Thomas, P. Schiffer, S. Capella-Gutierrez, S. Cosentino, S. E. McGlynn, S. Kuraku, S. Forslund, S. Kelly, S. Lewis, T. Jones, T. Mendes de Farias, T. Maeda, T. Gabaldón, W. Iwasaki, W. Pearson, Y. Wang, Y. Nevers, and Y. Hara
• Ten Years of Collaborative Progress in the Quest for Orthologs

  Molecular Biology and Evolution

  B. Linard, I. Ebersberger, S. E. McGlynn, N. Glover, T. Mochizuki, M. Patricio, O. Lecompte, Y. Nevers, P. D. Thomas, T. Gabaldón, E. Sonnhammer, C. Dessimoz, I. Uchiyama, A. Altenhoff, A. Ouangraoua, A. Warwick Vesztrocy, B. Linard, C. Dessimoz, D. Szklarczyk, D. Durand, D. Emms, D. Moi, D. Thybert, E. Sonnhammer, E. Kriventseva, H. Tang, H. Chiba, I. Uchiyama, I. Ebersberger, J. Huerta-Cepas, J. Tomas Fernandez-Breis, J. A. Blake, L. Pryszcz, M-J. Martin, M. Marcet Houben, M. Patricio, M. Muffato, N. Glover, O. Lecompte, P. D. Thomas, P. Schiffer, S. Capella-Gutierrez, S. Cosentino, S. E. McGlynn, S. Kuraku, S. Forslund, S. Kelly, S. Lewis, T. Jones, T. Mendes de Farias, T. Maeda, T. Gabaldón, W. Iwasaki, W. Pearson, Y. Wang, Y. Nevers, and Y. Hara