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2022

Detection of early seeding of Richter transformation in chronic lymphocytic leukemiaAbstract

Nature Medicine

F. Nadeu, R. Royo, R. Massoni-Badosa, H. Playa-Albinyana, B. Garcia-Torre, M. Duran-Ferrer, K. J. Dawson, M. Kulis, A. Diaz-Navarro, N. Villamor, J. L. Melero, V. Chapaprieta, A. Dueso-Barroso, J. Delgado, R. Moia, S. Ruiz-Gil, D. Marchese, A. Giró, N. Verdaguer-Dot, M. Romo, G. Clot, M. Rozman, G. Frigola, A. Rivas-Delgado, T. Baumann, M. Alcoceba, M. González, F. Climent, P. Abrisqueta, J. Castellví, F. Bosch, M. Aymerich, A. Enjuanes, S. Ruiz-Gaspà, A. López-Guillermo, P. Jares, S. Beà, S. Capella-Gutierrez, J. Ll. Gelpi, N. López-Bigas, D. Torrents, P. J. Campbell, I. Gut, D. Rossi, G. Gaidano, X. S. Puente, P. M. Garcia-Roves, D. Colomer, H. Heyn, F. Maura, J. I. Martin-Subero, and E. Campo
Wiley Interdisciplinary Reviews: Computational Molecular Science

WIREs Computational Molecular Science

M. Wieczór, V. Genna, J. Aranda, R. M. Badia, J. Lluis Gelpí, V. Gapsys, B. L. de Groot, E. Lindahl, M. Municoy, A. Hospital, and M. Orozco
ATM germline variants in a young adult with chronic lymphocytic leukemia: 8 years of genomic evolution

Blood Cancer Journal

R. Royo, L. Magnano, J. Delgado, S. Ruiz-Gil, J. Ll. Gelpi, H. Heyn, M. A. Taylor, T. Stankovic, X. S. Puente, F. Nadeu, and E. Campo
BioExcel Building Blocks Workflows (BioBB-Wfs), an integrated web-based platform for biomolecular simulations

Nucleic Acids Research

G. Bayarri, P. Andrio, A. Hospital, M. Orozco, and J. Lluis Gelpí
BioExcel Building Blocks REST API (BioBB REST API), programmatic access to interoperable biomolecular simulation

Bioinformatics

G. Bayarri, P. Andrio, A. Hospital, M. Orozco, and J. Lluis Gelpí

2021

An agenda-setting paper on data sharing platforms: euCanSHare workshop

Open Research Europe

T. Devriendt, C. Ammann, F. W. Asselbergs, A. Bernier, R. Costas, M. G. Friedrich, J. L. Gelpí, M-R. Jarvelin, K. Kuulasmaa, K. Lekadir, M. Th. Mayrhofer, V. Papez, G. Pasterkamp, S. E. Petersen, C. Oliver Schmidt, J. Schulz-Menger, S. Söderberg, M. Shabani, G. Veronesi, D. Steven Viezzer, and P. Borry
Identifying causative mechanisms linking early-life stress to psycho-cardio-metabolic multi-morbidity: The EarlyCause project

PLOS ONE

N. Mariani, A. Borsini, C. A. M. Cecil, J. F. Felix, S. Sebert, A. Cattaneo, E. Walton, Y. Milaneschi, G. Cochrane, C. Amid, J. Rajan, J. Giacobbe, Y. Sanz, A. Agustí, T. Sorg, Y. Herault, J. Miettunen, P. Parmar, N. Cattane, V. Jaddoe, J. Lötjönen, C. Buisan, M. A. Gonzál Ballester, G. Piella, J. L. Gelpí, F. Lamers, B. W. J. H. Penninx, H. Tiemeier, M. von Tottleben, R. Thiel, K. F. Heil, M-R. Jarvelin, C. Pariante, I. M. Mansuy, and K. Lekadir

2020

Butler enables rapid cloud-based analysis of thousands of human genomesAbstract

Nature Biotechnology

S. Yakneen, S. M. Waszak, M. Gertz, and J. O. Korbel
4D Genome Rewiring during Oncogene-Induced and Replicative Senescence

Molecular Cell

S. Sati, B. Bonev, Q. Szabo, D. Jost, P. Bensadoun, F. Serra, V. Loubiere, G. Lucio Papadopoulos, J-C. Rivera-Mulia, L. Fritsch, P. Bouret, D. Castillo, J. Ll. Gelpi, M. Orozco, C. Vaillant, F. Pellestor, F. Bantignies, M. A. Martí-Renom, D. M. Gilbert, J-M. Lemaitre, and G. Cavalli
The Quest for Orthologs benchmark service and consensus calls in 2020Abstract

Nucleic Acids Research

A. M. Altenhoff, J. Garrayo-Ventas, S. Cosentino, D. Emms, N. M. Glover, A. Hernández-Plaza, Y. Nevers, V. Sundesha, D. Szklarczyk, J. M. Fernández, L. Codó, the. Quest for Consortium, J. Ll Gelpi, J. Huerta-Cepas, W. Iwasaki, S. Kelly, O. Lecompte, M. Muffato, M. J. Martin, S. Capella-Gutierrez, P. D. Thomas, E. Sonnhammer, and C. Dessimoz

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