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2014

Functional characterization and modeling of protein-protein interfaces: lessons from docking

Protein-Protein Interactions on the Genomic Scale. Paris (France)

J. Fernández-Recio
Structure and energetics of protein-RNA interactions: new insights from docking predictions.

XIV Congress of the Spanish Biophysical Society. Alcalá de Henares (Spain).

L.. Pérez-Cano, M. Romero-Durana, and J. Fernández-Recio
EMMPRIN/CD147 is a co-receptor for VEGFR-2 in tumor angiogenesis: towards its inhibition.

Fund. Clin. Pharm.

F.. Khayati, J. Fernández-Recio, L.. Pérez, B.. Villoutreix, F.. Calvo, C.. Lebbe, S.. Menashi, and S.. Mourah
Structural bases for the interaction and stabilization of the human amino acid transporter LAT2 with its ancillary protein 4F2hc.

Proceedings of the National Academy of Sciences of the United States of America

A. Rosell, M. Meury, E. Alvarez-Marimon, M. Costa, L. Pérez-Cano, A. Zorzano, J. Fernández-Recio, M. Palacín, and D. Fotiadis
Blind prediction of interfacial water positions in CAPRI.

Proteins

M. F. Lensink, I. H. Moal, P. A. Bates, P. L. Kastritis, A. S. J. Melquiond, E. Karaca, C. Schmitz, M. van Dijk, A. M. J. J. Bonvin, M. Eisenstein, B. Jiménez-García, S. Grosdidier, A. Solernou, L. Pérez-Cano, C. Pallara, J. Fernández-Recio, J. Xu, P. Muthu, K. Praneeth Kilambi, J. J. Gray, S. Grudinin, G. Derevyanko, J. C. Mitchell, J. Wieting, E. Kanamori, Y. Tsuchiya, Y. Murakami, J. Sarmiento, D. M. Standley, M. Shirota, K. Kinoshita, H. Nakamura, M. Chavent, D. W. Ritchie, H. Park, J. Ko, H. Lee, C. Seok, Y. Shen, D. Kozakov, S. Vajda, P. J. Kundrotas, I. A. Vakser, B. G. Pierce, H. Hwang, T. Vreven, Z. Weng, I. Buch, E. Farkash, H. J. Wolfson, M. Zacharias, S. Qin, H-X. Zhou, S-Y. Huang, X. Zou, J. A. Wojdyla, C. Kleanthous, and S. J. Wodak

2013

The scoring of poses in protein-protein docking: current capabilities and future directions.

BMC bioinformatics

I. H. Moal, M. Torchala, P. A. Bates, and J. Fernández-Recio
Characterizing changes in the rate of protein-protein dissociation upon interface mutation using hotspot energy and organization.

PLoS computational biology

R. Agius, M. Torchala, I. H. Moal, J. Fernández-Recio, and P. A. Bates
Conformational transitions in human translin enable nucleic acid binding.

Nucleic acids research

L. Pérez-Cano, E. Eliahoo, K. Lasker, H. J. Wolfson, F. Glaser, H. Manor, P. Bernadó, and J. Fernández-Recio
Expanding the frontiers of protein-protein modeling: from docking and scoring to binding affinity predictions and other challenges.

Proteins

C. Pallara, B. Jiménez-García, L. Pérez-Cano, M. Romero-Durana, A. Solernou, S. Grosdidier, C. Pons, I. H. Moal, and J. Fernández-Recio
Scoring functions for protein-protein interactions.

Current opinion in structural biology

I. H. Moal, R. Moretti, D. Baker, and J. Fernández-Recio

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