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2015

Updates to the Integrated Protein-Protein Interaction Benchmarks: Docking Benchmark Version 5 and Affinity Benchmark Version 2

Journal of Molecular Biology

T. Vreven, I. H. Moal, A. Vangone, B. G. Pierce, P. L. Kastritis, M. Torchala, R. Chaleil, B. Jiménez-García, P. A. Bates, J. Fernandez-Recio, A. M. J. J. Bonvin, and Z. Weng

2014

Unraveling the sequence-dependent polymorphic behavior of d(CpG) steps in B-DNA.

Nucleic Acids Res

P. DanielDans, I. Faustino, F. Battistini, K. Zakrzewska, R. Lavery, and M. Orozco

2011

Prediction of protein-binding areas by small-world residue networks and application to docking.

BMC bioinformatics

C. Pons, F. Glaser, and J. Fernández-Recio
pyDockCG: new coarse-grained potential for protein-protein docking.

The journal of physical chemistry. B

A. Solernou, and J. Fernández-Recio
Effects of local electric fields on the redox free energy of single stranded DNA.

Chemical communications (Cambridge, England)

M. D'Abramo, M. Orozco, and A. Amadei
A systematic study of the energetics involved in structural changes upon association and connectivity in protein interaction networks.

Structure (London, England : 1993)

A. Stein, M. Rueda, A. Panjkovich, M. Orozco, and P. Aloy

2010

QM/MM methods: looking inside heme proteins biochemistry.

Biophysical chemistry

V. Guallar, and F. H. Wallrapp
QM/MM methods: looking inside heme proteins biochemistry.

Biophysical chemistry

V. Guallar, and F. Wallrapp

2009

Role of Pre-A motif in nitric oxide scavenging by truncated hemoglobin, HbN, of Mycobacterium tuberculosis.

The Journal of biological chemistry

A. Lama, S. Pawaria, A. Bidon-Chanal, A. Anand, J L. Gelpí, S. Arya, M. Martí, D. A. Estrin, F J. Luque, and K. L. Dikshit

2008

Mechanism of thermal decomposition of carbamoyl phosphate and its stabilization by aspartate and ornithine transcarbamoylases.

Proceedings of the National Academy of Sciences of the United States of America

Q. Wang, J. Xia, V. Guallar, G. Krilov, and E. R. Kantrowitz

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