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2012

MDWeb and MDMoby: an integrated web-based platform for molecular dynamics simulations.

Bioinformatics (Oxford, England)

A. Hospital, P. Andrio, C. Fenollosa, D. Cicin-Sain, M. Orozco, and J L. Gelpí
Structure of triplex DNA in the gas phase.

Journal of the American Chemical Society

A. Arcella, G. Portella, M L. Ruiz, R. Eritja, M. Vilaseca, V. Gabelica, and M. Orozco
Defining the nature of thermal intermediate in 3 state folding proteins: apoflavodoxin, a study case.

PLoS computational biology

R. García-Fandiño, P. Bernadó, S. Ayuso-Tejedor, J. Sancho, and M. Orozco
Exploring polymorphisms in B-DNA helical conformations.

Nucleic acids research

P. D. Dans, A. Pérez, I. Faustino, R. Lavery, and M. Orozco

2011

Regulation of electron and proton transfer by the protein matrix of cytochrome c oxidase.

The journal of physical chemistry. B

V. Daskalakis, S. C. Farantos, V. Guallar, and C. Varotsis
A new view of the bacterial cytosol environment.

PLoS computational biology

B. P. Cossins, M. P. Jacobson, and V. Guallar
Nucleotide binding switches the information flow in ras GTPases.

PLoS computational biology

F. Raimondi, G. Portella, M. Orozco, and F. Fanelli
A systematic study of the energetics involved in structural changes upon association and connectivity in protein interaction networks.

Structure (London, England : 1993)

A. Stein, M. Rueda, A. Panjkovich, M. Orozco, and P. Aloy
The native ensemble and folding of a protein molten-globule: functional consequence of downhill folding.

Journal of the American Chemical Society

A. N. Naganathan, and M. Orozco

2010

MoDEL (Molecular Dynamics Extended Library): a database of atomistic molecular dynamics trajectories.

Structure (London, England : 1993)

T. Meyer, M. D'Abramo, A. Hospital, M. Rueda, C. Ferrer-Costa, A. Pérez, O. Carrillo, J. Camps, C. Fenollosa, D. Repchevsky, J L. Gelpí, and M. Orozco

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