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2022

Optimizing Dosage-Specific Treatments in a Multi-Scale Model of a Tumor

Frontiers in Molecular Biosciences

M. Ponce-de-Leon, A. Montagud, C. Akasiadis, J. Schreiber, T. Ntiniakou, and A. Valencia
Parallel model exploration for tumor treatment simulations

Computational Intelligence

C. Akasiadis, M. Ponce‐de‐Leon, A. Montagud, E. Michelioudakis, A. Atsidakou, E. Alevizos, A. Artikis, A. Valencia, and G. Paliouras
Patient-specific Boolean models of signalling networks guide personalised treatments

eLife

A. Montagud, J. Béal, L. Tobalina, P. Traynard, V. Subramanian, B. Szalai, R. Alföldi, L. Puskás, A. Valencia, E. Barillot, J. Saez-Rodriguez, and L. Calzone

2021

BioFVM-X: An MPI+OpenMP 3-D Simulator for Biological Systems

G. Saxena, M. Ponce-de-Leon, A. Montagud, D. Vicente Dorca, and A. Valencia
Artificial Intelligence–Aided Precision Medicine for COVID-19: Strategic Areas of Research and Development

Journal of Medical Internet Research

E. Santus, N. Marino, D. Cirillo, E. Chersoni, A. Montagud, A. Santuccion Chadha, A. Valencia, K. Hughes, and C. Lindvall
COVID19 Disease Map, a computational knowledge repository of virus–host interaction mechanisms

Molecular Systems Biology

M. Ostaszewski, A. Niarakis, A. Mazein, I. Kuperstein, R. Phair, A. Orta‐Resendiz, V. Singh, S. Sadat Aghamiri, M. Luis Acencio, E. Glaab, et al.
Systems biology at the giga-scale: Large multiscale models of complex, heterogeneous multicellular systems

Current Opinion in Systems Biology

A. Montagud, M. Ponce-de-Leon, and A. Valencia
BioFVM-X: An MPI+OpenMP 3-D Simulator for Biological SystemsAbstract

Lecture Notes in Computer Science

G. Saxena, M. Ponce-de-Leon, A. Montagud, D. Vicente Dorca, and A. Valencia
Artificial Intelligence–Aided Precision Medicine for COVID-19: Strategic Areas of Research and Development

Journal of Medical Internet Research

E. Santus, N. Marino, D. Cirillo, E. Chersoni, A. Montagud, A. Santuccion Chadha, A. Valencia, K. Hughes, and C. Lindvall

2020

INforE: Interactive Cross-platform Analytics for Everyone

CIKM '20: The 29th ACM International Conference on Information and Knowledge ManagementProceedings of the 29th ACM International Conference on Information & Knowledge Management

N. Giatrakos, D. Arnu, T. Bitsakis, A. Deligiannakis, M. Garofalakis, R. Klinkenberg, A. Konidaris, A. Kontaxakis, Y. Kotidis, V. Samoladas, A. Simitsis, G. Stamatakis, F. Temme, M. Torok, E. Yaqub, A. Montagud, M. Ponce-de-Leon, H. Arndt, and S. Burkard

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