PATC: Simulation Environments for Life Sciences

Date: 14/Mar/2018 Time: 09:00 - 15/Mar/2018 Time: 18:00


The course will take place in
Barcelona Supercomputing Centre,
within the UPC Campus Nord premises

Vertex Building. Room VS208

Target group: Level: (All courses are designed for specialists with at least 1st cycle degree or similar background experience) INTERMEDIATE: for trainees with some theoretical and practical knowledge.

Cost: There is no registration fee. The attendees would need to cover the expenses for travel, accommodation and meals.

Primary tabs

Day 1

Session 1
09.00h – Welcome & Introduction (JLG)
10.30h – Break
11.00h – Atomistic MD Algorithm (JLG)
11.45h –  Algorithm improvements & HPC (JLG)
12.30h – Break

Session 2
14.00h – Simulation Setup (AH)
15.00h – Setup and Analysis Hands On (AH)
16.00h – Break
16.30h – Setup and Analysis Hands On (AH)  
18.00h – Adjourn


Day 2

Session 3
09.00h – Simulation DBs (MoDEL) (PA)
10.00h – Simulation Data Management (PA)
10.30h – Break
11.00h – Coarse Grained MD (PD)
12.00h – Application Examples (PD)
13.00h – Break

Session 4
14.00h – Nucleic acids and chromatin Coarse-Grained simulation (JW)
16.00h – Break
16.30h – Free Hands-on
18.00h – End of the course


PD: Pablo Dans (IRB-Barcelona)

JW: Jurgen Walther (IRB-Barcelona)