PATC: Introduction to Simulation Environments for Life Sciences

Date: 11/Mar/2020 Time: 09:00 - 12/Mar/2020 Time: 18:00


The course will take place in Barcelona Supercomputing Center, within the UPC Campus Nord premises: Vertex Building. Room VS208

Target group: Level: (All courses are designed for specialists with at least 1st cycle degree or similar background experience) INTERMEDIATE: for trainees with some theoretical and practical knowledge.

Cost: There is no registration fee. The attendees would need to cover the expenses for travel, accommodation and meals.

Primary tabs

Day 1

Session 1
09.00h – Welcome & Introduction (JLG)

10.30h – Break
11.00h – Atomistic MD Algorithm (JLG)
11.45h – Algorithm improvements & HPC (JLG)
12.30h – Break

Session 2
14.00h – Simulation Setup (FB)
15.30h – Break

16.30h – Setup and Analysis Hands On (PA)
18.00h – Adjourn

Day 2

Session 3
09.00h – Simulation DBs and Data Management (PA)

10.30h – Break
11.00h – Coarse Grained MD (PD)
12.00h – Application Examples (PD)
13.00h – Break

Session 4
14.00h – Trajectory visualization and analysis (PA)
16.00h – Break
16.30h – Report writing (FB, PA)
18.00h – End of the course

PD: Pablo Dans (IRB-Barcelona)

PA: Pau Andrio (BSC)

FB: Federica Battistini (IRB-Barcelona)