[ONLINE] PATC: Introduction to Simulation Environments for Life Sciences

Date: 17/Mar/2021 Time: 09:00 - 18/Mar/2021 Time: 18:00

Place:

Online via Zoom

 

Target group: Level: (All courses are designed for specialists with at least 1st cycle degree or similar background experience) INTERMEDIATE: for trainees with some theoretical and practical knowledge.

Cost: There is no registration fee.

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Agenda          
           
17 March     18 March
09.00 - 10.30 Welcome & Introduction (JLG) 09.00 - 10.30 Simulation DBs and simulation data management patc.zip (PA)    
10.30 - 11.00 Break 10.30 - 11.00 Break    
11.00 - 11.45 Atomistic MD Algorithm (JLG) 11.00 - 11.45 MD a la carte (FC)    
11.45 - 12.30 Algorithm improvements & HPC (JLG) 11.45 - 12.30 Introduction coarse-grained simulations (PDD)    
12.30 - 14.00 Break 12.30 - 14.00 Break    
14.00 - 15.30 Simulation Setup (FB) 14.00 - 15.00 Trajectory visualization (AH)    
15.30 - 16.30 Break 15.00 - 16.00 Trajectory analysis (AH)    
16.30 - 18.00 Setup and Analysis Hands On (AH) 16.00 - 16.30 Break    
16.30 - 18.00 Survey and Report Writting    
           
  JLG: Josep Ll. Gelpi (BSC - IRB - UB)    
  FC: Francesco Colizzi (IRB)      
  PA: Pau Andrio (BSC)      
  FB: Federica Batistini (IRB - UB)    
  AH: Adam Hospital (IRB)      
  PDD: Pablo Dans (UDELAR - IP - IRB)