9th BSC Doctoral Symposium 2022
Date: 10/May/2022 Time: 09:00 - 12/May/2022 Time: 18:00
Target group: PhD students, as well as early stages PostDoc researchers and late stages MSc students in the BSC areas of research and complementing areas.
Cost: The Symposium is free of charge.
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PROGRAM
DAY 1 (May 10th)
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Start time
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Activity
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Speaker/s
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Chair
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8.30h
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Registration
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9.00h
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Welcome and opening
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Josep Mª Martorell, BSC Associate Director
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Maria Ribera Sancho
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9.20h
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Keynote talk: Competences as the key to success for strong technological developments
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Bastian Koller, Mananging Director, HLRS
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Bastian Koller will present the idea behind the activity of building National Centres of Excellence in Europe and how it is being implemented. First successes will be presented and the embedding of the network of competence centres in the European HPC ecosystem will be shown. It will also become clear how important competences are in the European HPC strategy and how to interact with the (constantly growing) network at national and European level.
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10.30h
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Event Photo
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10.40h
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Coffee break & First Poster Session
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A platform for antibody design
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Anna Maria Díaz-Rovira (LS - Electronic and Atomic Protein Modelling)
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Designing a Cloud and HPC Based M&S platform to Investigate the IVD Diseases Mechanism
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Maria Paola Ferri (LS - INB) | ||
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FAIRsoft - A practical implementation of FAIR principles for research software
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Eva Martín del Pico (LS - INB) | ||
| CSDownscale: an R Package for Statistical Downscaling | Jaume Ramon (ES - Earth System Services) | ||
| Low Input Promoter Capture Hi-C Method Enables to Decipher the Molecular Mechanisms Underlying Genetically Complex Diseases | Paula López-Martí (LS - Computational Biology Life Sciences) | ||
| JLOH: Extracting Loss of Heterozygosity Blocks from Short-Read Sequencing Data | Matteo Schiavinato (LS - Comparative Genomics) | ||
| 11.40h | First Talk Session: Performance | ||
| TACL: Interoperating asynchronous device APIs with task-based programming models | David Álvarez (CS - Programming Models ) | Víctor Guallar | |
| 12.00h | PredIG: a predictor of T-cell immunogenicity | Roc Farriol-Duran (LS - Electronic and Atomic Protein Modelling) | |
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12.20h
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Exploring Task Scheduling Sensitivity to L1 Cache configuration on a 32-core RISC-V Processor |
Lucas Morais (CS - Computer Architecture for Parallel Paradigms)
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12.40h
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Investigating Memory Prefetcher Performance over Parallel Applications: From Real to Simulated
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Valéria Soldera Girelli (CS - Memory technologies)
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13.00h
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Lunch Break
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14.00h
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Tutorial 1st part
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“Effective Team Work and External Collaborations”
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Moisès Martínez
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The purpose of the workshop is to deliver a tailor made training experience with content and strategies focused on the following:
how to deal with a director and teammates, |
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17.00h
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Adjourn
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DAY 2 (May 11th)
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Start time
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Activity
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Speaker/s
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Chair
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9.00h
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Opening of the second day
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9.10h
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Second Talk Session: Simulations and Modelling 1
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9.10h
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The development of high-order methods for finite elements to study turbulent reacting flow
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Antonio Blanco Casares (CASE - Propulsion Technologies)
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Eduardo Pérez
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9.30h
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Implementation of cellular transport models within a multiscale simulation software
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Othmane Hayoun Mya (LS - Computational Biology)
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9.50h
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Numerical Investigation of Unsteady Processes in Combustion using Flame Transfer Function
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Phivos Andreou Koumides (CASE - Propulsion Technologies Group)
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10.10h
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Non-Reacting Large Eddy Simulation of a Low Swirl Burner
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Fredherico Rodrigues (CASE - Propulsion Technologies)
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10.30h
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Coffee break & Second Poster Session
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Distributed Tabulation of Flamelet Lookup Tables
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Nicholas Abel (CASE - Propulsion Technologies)
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Discovering the Ethereum2 P2P Network
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Mikel Cortes Goicoechea (CS - Resilience in Distributed Systems)
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Multi-model Forecast Quality Assessment of CMIP6 Decadal Predictions
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Carlos Delgdo-Torres (ES - Earth System Services)
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Ground-Level Ozone Simulations Improved by Updating Land Cover Databases
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Franco López (ES - Atmospheric Composition)
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Rational Enzyme Engineering of Different Active Sites on a Xylanase
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Rubén Muñoz Tafalla (LS - Electronic and Atomic Protein Modelling)
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Development of corrections for the absolute free binding energy prediction
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Ignasi Puch-Giner (LS - Electronic and Atomic Protein Modelling)
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11.40h
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Third Talk Session: Performance 1
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11.40h
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Improving resource usage in large FPGA accelerators
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Antonio Filgueras (CS - Programming Models)
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CAMP First GPU Solver: A Solution to Accelerate Chemistry in Atmospheric Models
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Christian Guzman Ruiz (ES - Computational Earth Sciences)
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Xavier Martorell |
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12.20h
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b8c: an FPGA-Friendly Sparse Matrix Representation Suitable for the SpMV kernel
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José Oliver Segura (CS - Programming Models)
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12.40h
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HBM, Present and Future of HPC based on FPGAs
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Elias Augusto Perdomo Hourné (CS - European Exascale Accelerator)
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| 13.00h |
Lunch Break
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| 14.00h |
Tutorial session 2
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“Effective Team Work and External Collaborations”
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Moisès Martínez
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The purpose of the workshop is to deliver a tailor made training experience with content and strategies focused on the following:
how to deal with a director and teammates, |
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17.00h
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Adjourn
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DAY 3 (May 12th)
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Start time
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Activity
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Speaker/s
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Chair
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9.00h
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Opening of the third day
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9.10h
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Fourth Talk Session: Simulations and Modelling 1
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9.10h
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Numerical Simulations for the Atomic Beam Probe
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Mátyás Aradi (CASE - Fusion)
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Dani Guallart
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9.30h
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Nuclear Fusion Reactor Materials: Modelling Atomic-Scale Irradiation Damage in Metal
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Mary Kathleen Chessey (CASE - Fusion)
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9.50h
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Comparison of Five Strategies for Seasonal Prediction of Bioclimatic Indicators in the Olive Sector
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Chihchung Chou (ES - Earth System Services Group)
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10.10h
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Adaptive points to estimate the Lebesgue constant on the simplex
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Albert Jiménez Ramos (CASE - Geometry and Meshing for simulations)
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Preparing plasma heating in ITER using integrated modelling
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Tomás Bensadon (CASE - Fusion)
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10.50h
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Coffee break & Third Poster Session
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Foreign and domestic contributions to surface ozone on Spain
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Roger Garatachea (ES - Atmospheric Composition)
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Respiratory tract microbiome modifications after lung transplantation and its impact in CLAD
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Olfat Khannous (LS - Comparative Genomics)
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Organic Particle Export, Remineralization and Advection in the North Atlantic mesopelagic layer
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M. Andrea Orihuela-García (LS - Climate Prediction)
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Characterisation of Ozone levels and associated NMVOC emissions in Spain: a preliminary assessment
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Kevin Oliveira (ES - Atmospheric Composition)
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Experimental Analysis on the NXP’s T2080 Cache Coherence: A Step Towards MPSoCs in Critical Systems
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Roger Pujol Torramorell (CS - Operating System / Computer ArchitectureInterface)
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Space Shuttle: A Test Vehicle for the Reliability of the SkyWater 130nm PDK using OpenLane and the Google/E-fabless Shuttle Run
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Ivan Rodriguez-Ferrandez (CS - Operating System / Computer Architecture Interface)
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11.50h
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Fifth Talk Session: Life Sciences
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11.50h
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Characterisation of inter-individual genomic variability across populations of different genetic ancestries
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Rubén Chazarra Gil (LS - Transcriptomics and Functional Genomics Lab)
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Raquel García |
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12.10h
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Transcriptome Analysis of Differential Gene Expression in Disease
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José Miguel Ramírez (LS - Transcriptomics and Functional Genomics Lab)
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12.30h
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RosneT: A Block Tensor Algebra Library for Out-of-Core Quantum Computing Simulation
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Sergio Sánchez Ramírez (CASE - Quantic)
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12.50h
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Exploring the recent evolution of yeast pathogens using the CandidaMine database
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Miquel Àngel Schikora Tamarit (LS - Comparative Genomics)
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13.10h |
Lunch
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| 14.00h |
Sixth Talk Session: Machine Learning and its applications
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14.00h
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Focus! Rating XAI Methods and Finding Biases
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Anna Arias Duart (CS - High Performance Artificial Intelligence)
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Daniele Lezzi |
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14.20h
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Reaching a modular, generic and containerized development in Biomedical Natural Language Processing systems
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Javier Corvi (LS - INB)
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14.40h
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QUARQ QUick Approximate and Relaxed Querying
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Victor-Alejandro Ortiz (CASE - Smart Cities)
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15.00h
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Hyperparameter Optimization using Agents for Large Scale Machine Learning
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Pere Vergés Boncompte (CS - Workflows and Distributed Computing)
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15.20h
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Final remarks and End of Doctoral Symposium
Cool off and closing drinks at the BSC terrace |
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