4th BSC Severo Ochoa Doctoral Symposium 2017
Date: 02/May/2017 Time: 09:00 - 04/May/2017 Time: 18:00
Place:
The Doctorl Symposium will take place in
Barcelona Supercomputing Centre,
within the UPC Campus Nord premises.
Building A3 on the map . Aula Master
Target group: PhD students as well as early stages PostDoc researchers and late stages MSc students in the BSC areas of research and complementing areas.
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Day 1 (2nd of May)
| Start time | Activity | Speaker/s |
|---|---|---|
| 8.30 h | Registration | |
| 9.00h | Welcome and opening | Mateo Valero, BSC Director |
| 9.20h | Event Photo | |
| Coffee break & First Poster Session 9:40 until 10:30 | ||
| 1 | Supporting Real-Time Visual Analytics in Neuroscience | Enrique Javier Arriaga Varela |
| 2 | Advanced Vector Architectures for Future Applications | Adrián Barredo Ferreira |
| 3 | Leveraging FPGAs to Accelerate the Query Processing of SQL-Based DataBases | Behzad Salami |
| 4 | Time-Predictable Parallel Programming Models | Maria A. Serrano |
| 5 | Protein modelling for enzyme engineering | Rubén Cañadas |
| First Talk Session: HPC & Novel Computer Architectures 10:30 until 12:50 | ||
| 1 | Performance Impact of a Slower Main Memory: A case study of STT-MRAM in HPC | Kazi Asifuzzaman |
| 2 | Aggregating and Managing Memory Capacity Across Computing Nodes in Cloud Environments | Luis Angel Garrido |
| 3 | Energy Optimizing Methodologies On Heterogeneous Data Centers | Rajiv Nishtala |
| 4 | Machine Learning Performance Prediction Model for Heterogeneous Systems | Daniel Nemirovsky |
| 5 | Performance Analysis on the Intel Knights Landing Architecture | Michael Wagner |
| 12.50h | Lunch break | |
| 14.00h | Tutorial part 1 - Deep Learning (Dr Dario Garcia Gasulla): The tutorial will review the basic concepts, will define a few neural network models (including CNN), train them and evaluate their performance for image classification and some other related tasks. | |
| 16.00h | Coffee break | |
| Tutorial part 1 continues | ||
| 18.00h | Adjourn | |
Day 2 (3rd of May)
| Start time | Activity | Speaker/s |
|---|---|---|
| 9.00h | Opening of the second day | |
| Second Talk Session: Mathematics, Algorithms & Computational Sci. 9:10 until 10:30 | ||
| 6 | Discovering Ship Navigation Patterns towards Environmental Impact Modeling | Alberto Gutiérrez Torre |
| 7 | Identification and Characterization of Recurrent Deletions in the Human Genome Promoted by Expression of Transposase-Derived Gene Across Different Tumour Types | Elias Rodriguez-Fos |
| 8 | Functional implications of the structural genomic rearrangements in cancer | Luisa Fernanda Delgado Serrano |
| 9 | Exploring the use of mixed precision in NEMO | Tintó-Prims |
| 10 | ORCHESTRA: An Asyncronous Non-Blocking Didtributed GVT Algorithm | Tommaso Tocci |
| Coffee break & Second Poster Session 10:30 till 11:20 | ||
| 1 | Prediction of binding energies upon mutation in 3D-structure-known complexes through PyDock scoring functions | Bruno Cuevas Zuviria |
| 2 | Impact of Aerosol Microphysical Properties on Mass Scattering Cross Sections | Vincenzo Obiso |
| 3 | On the suitability of Time-Randomized Processors for Secure and Reliable High-Performance Computing | David Trilla |
| 4 | Improving Parallelization in Monte Carlo Hybrid Methods for Linear Algebra | Oscar A. Esquivel-Flores |
| 5 | A case for code-representative microbenchmarks | Calvin Bulla |
| Third Talk Session: Programming Models, Performance analysis & Software Tools 11:20 until 12:40 | ||
| 11 | Programming models for mobile environments | Francesc-Josep Lordan Gomis |
| 12 | GUIDANCE: An Integrated Framework for Large-scale Genome and PhenomeWide Association Studies on Parallel Computing Platforms | Marta Guindo-Martínez |
| 13 | Testing simple models for street wind conditions in Barcelona | Jaime Benavides |
| 14 | Web-based tool for the annotation of pathological variants on proteins: PMut 2017 update | Víctor López Ferrando |
| 15 | Python for HPC geophysical electromagnetic applications: experiences and perspectives | Octavio Castillo-Reyes |
| 12.40h | Lunch break | |
| 14.00h | Tutorial Deep Learning - part 2 | |
| 16.00h | Coffee break | |
| Tutorial part 2 continues | ||
| 18.00h | End of the Tutorials and Adjourn | |
Day 3 (4th of May)
| Start time | Activity | Speaker/s |
|---|---|---|
| 9.00h | Opening of the third day | |
| Fourth Talk Session: Simulations & Modeling 9:10 until 10:30 | ||
| 16 | Data-Driven Crowd Simulation | Hugo Perez |
| 17 | A new Reliability-Based Data-Driven approach to Simulation-Based Models | Jacobo Ayensa Jiménez |
| 18 | Level of Detail for Complex Urban Scenes with Varied Animated Crowds, using XML | Leonel Antonio Toledo |
| 19 | Effect of Terrain Relief on Dust Transport over Complex Terrains in West Asia | Lluís Vendrell |
| 20 | pyDockDNA: A new approach for protein-DNA docking | Luis Ángel Rodríguez Lumbreras |
| Coffee break & Third Poster Session 10:30 until 11:20 | ||
| 1 | Deep and Cognitive Learning applied to Precision Medicine: the initial experiments linking (epi)genome to phenotypes-disease characteristics. | Davide Cirillo |
| 2 | Stabilization of Microturbulence by Fast Ions in ASDEX Upgrade | Felipe Nathan Oliveira Lopes |
| 3 | Main Memory in HPC: Do We Need More or Could We Live with Less? | Darko Zivanovic |
| 4 | Excited state gradients within a polarizable QM/MM formulation | Maximilian Menger |
| 5 | Vortex Induced Vibration (VIV) of circular cylinders at high Reynolds numbers | Daniel Pastrana |
| Keynote talk Session 11:20 until 13:00 | Prof Alfonso Valencia | |
| 13.00h | Lunch break | |
| Fifth Talk Session: Mathematics, Algorithms & Computational Sci. 14:20 until 16:00 | ||
| 21 | Protein modelling for enzyme engineering | Gerard Santiago |
| 22 | Classification of retrotransposition during somatic variant calling in cancer genomes | Jordi Valls Margarit |
| 23 | Relevant aspects of the seismic hazard in Colima, Mexico | Armando Aguilar-Meléndez |
| 24 | SMuFin2: generating and implementing new and more efficient search engines integrated in particular hardware architectures | Mercè Planas-Fèlix |
| 25 | Uncertainty in near-surface wind speed trends at seasonal time scales | Verónica Torralba |
| 26 | Production Planning and Scheduling Optimization Model: A case of study for a Glass Container Company | Laura Hervert-Escobar |
| Coffee break & Fourth Poster Session 16:00 until 16:50 | ||
| 1 | Exploring the Relationship between Gene Expression and Topological Properties of Arabidopsis thaliana Interactome Network. | Silvia M. Gimenez |
| 2 | Simulations of Alfvénic Modes in TJ-II Stellarator | Allah Rakha |
| 3 | Composite materials calculation using HPC-based multiscale technique. | Guido Giuntoli |
| 4 | Application of Reduced order Modelling in Geophysics | Prattya Datta |
| 5 | Saiph, a Domain Specific Language for Computational Fluid Dynamics simulations | Sandra Macià Sorrosal |
| 16:50h | Conclusions | |