Computational Genomics

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Showing 1 - 30 results of 83

2022

Detection of early seeding of Richter transformation in chronic lymphocytic leukemiaAbstract

Nature Medicine

F. Nadeu, R. Royo, R. Massoni-Badosa, H. Playa-Albinyana, B. Garcia-Torre, M. Duran-Ferrer, K. J. Dawson, M. Kulis, A. Diaz-Navarro, N. Villamor, J. L. Melero, V. Chapaprieta, A. Dueso-Barroso, J. Delgado, R. Moia, S. Ruiz-Gil, D. Marchese, A. Giró, N. Verdaguer-Dot, M. Romo, G. Clot, M. Rozman, G. Frigola, A. Rivas-Delgado, T. Baumann, M. Alcoceba, M. González, F. Climent, P. Abrisqueta, J. Castellví, F. Bosch, M. Aymerich, A. Enjuanes, S. Ruiz-Gaspà, A. López-Guillermo, P. Jares, S. Beà, S. Capella-Gutierrez, J. Ll. Gelpi, N. López-Bigas, D. Torrents, P. J. Campbell, I. Gut, D. Rossi, G. Gaidano, X. S. Puente, P. M. Garcia-Roves, D. Colomer, H. Heyn, F. Maura, J. I. Martin-Subero, and E. Campo
GCAT|Panel, a comprehensive structural variant haplotype map of the Iberian population from high-coverage whole-genome sequencing

Nucleic Acids Research

J. Valls-Margarit, I. Galván-Femenía, D. Matías-Sánchez, N. Blay, M. Puiggròs, A. Carreras, C. Salvoro, B. Cortés, R. Amela, X. Farre, J. Lerga-Jaso, M. Puig, J. Francisco Sánchez-Herrero, V. Moreno, M. Perucho, L. Sumoy, L. Armengol, O. Delaneau, M. Cáceres, R. de Cid, and D. Torrents
GCAT|Panel, a comprehensive structural variant haplotype map of the Iberian population from high-coverage whole-genome sequencingAbstract

Nucleic Acids Research

J. Valls-Margarit, I. Galván-Femenía, D. Matías-Sánchez, N. Blay, M. Puiggròs, A. Carreras, C. Salvoro, B. Cortés, R. Amela, X. Farre, J. Lerga-Jaso, M. Puig, J. Francisco Sánchez-Herrero, V. Moreno, M. Perucho, L. Sumoy, L. Armengol, O. Delaneau, M. Cáceres, R. de Cid, and D. Torrents
Clustering and graph mining techniques for classification of complex structural variations in cancer genomes

Scientific Reports

G. Gomez-Sanchez, L. Delgado-Serrano, D. Carrera, D. Torrents, and J L. Berral
Author Correction: Clustering and graph mining techniques for classification of complex structural variations in cancer genomes

Scientific Reports

G. Gomez-Sanchez, L. Delgado-Serrano, D. Carrera, D. Torrents, and J L. Berral

2021

In Search of Complex Disease Risk through Genome Wide Association Studies

Mathematics

L. Alonso, I. Moran, C. Salvoro, and D. Torrents
Recessive Genome-Wide Meta-analysis Illuminates Genetic Architecture of Type 2 Diabetes

Diabetes

M. J. O’Connor, P. Schroeder, A. Huerta-Chagoya, P. Cortes-Sánchez, S. Bonàs-Guarch, M. Guindo-Martínez, J. B. Cole, V. Kaur, D. Torrents, K. Veerapen, N. Grarup, M. Kurki, C. F. Rundsten, O. Pedersen, I. Brandslund, A. Linneberg, T. Hansen, A. Leong, J. C. Florez, and J. M. Mercader
The impact of non-additive genetic associations on age-related complex diseases

Nature Communications

M. Guindo-Martínez, R. Amela, S. Bonàs-Guarch, M. Puiggròs, C. Salvoro, I. Miguel-Escalada, C. E. Carey, J. B. Cole, S. Rüeger, E. Atkinson, A. Leong, F. Sánchez, C. Ramon-Cortes, J. Ejarque, D. S. Palmer, M. Kurki, K. Aragam, J. C. Florez, R. M. Badia, J. M. Mercader, and D. Torrents
TIGER: The gene expression regulatory variation landscape of human pancreatic islets

Cell Reports

L. Alonso, A. Piron, I. Moran, M. Guindo-Martínez, S. Bonàs-Guarch, G. Atla, I. Miguel-Escalada, R. Royo, M. Puiggròs, X. Garcia-Hurtado, M. Suleiman, L. Marselli, J. L. S. Esguerra, J-V. Turatsinze, J. M. Torres, V. Nylander, J. Chen, L. Eliasson, M. Defrance, R. Amela, H. Mulder, A. L. Gloyn, L. Groop, P. Marchetti, D. L. Eizirik, J. Ferrer, J. M. Mercader, M. Cnop, and D. Torrents
Adherence to a Supplemented Mediterranean Diet Drives Changes in the Gut Microbiota of HIV-1-Infected Individuals

Nutrients

R. Pastor-Ibáñez, J. Blanco-Heredia, F. Etcheverry, S. Sánchez-Palomino, F. Díez-Fuertes, R. Casas, M. Ángeles Navarrete-Muñoz, S. Castro-Barquero, C. Lucero, I. Fernández, L. Leal, J. Miguel Benito, M. Noguera-Julian, R. Paredes, N. Rallón, R. Estruch, D. Torrents, and F. García

2020

The proliferative history shapes the DNA methylome of B-cell tumors and predicts clinical outcome

Nature Cancer

M. Duran-Ferrer, G. Clot, F. Nadeu, R. Beekman, T. Baumann, J. Nordlund, Y. Marincevic-Zuniga, G. Lönnerholm, A. Rivas-Delgado, S. Martín, R. Ordoñez, G. Castellano, M. Kulis, A. C. Queirós, S-T. Lee, J. Wiemels, R. Royo, M. Puiggròs, J. Lu, E. Giné, S. Beà, P. Jares, X. Agirre, F. Prosper, C. López-Otín, X. S. Puente, C. C. Oakes, T. Zenz, J. Delgado, A. López-Guillermo, E. Campo, and J. Ignacio Martín-Subero
Butler enables rapid cloud-based analysis of thousands of human genomesAbstract

Nature Biotechnology

S. Yakneen, S. M. Waszak, M. Gertz, and J. O. Korbel
Sex differences in oncogenic mutational processes

Nature Communications

C. H. Li, S. D. Prokopec, R. X. Sun, F. Yousif, N. Schmitz, P. C. Boutros, and
Retrospective evaluation of whole exome and genome mutation calls in 746 cancer samplesAbstract

Nature Communications

M. H. Bailey, W. U. Meyerson, L. Jonathan Dursi, L-B. Wang, G. Dong, W-W. Liang, A. Weerasinghe, S. Li, Y. Li, S. Kelso, G. Saksena, K. Ellrott, M. C. Wendl, D. A. Wheeler, G. Getz, J. T. Simpson, M. B. Gerstein, and L. Ding
Pan-cancer analysis of whole genomes

Nature

2018

Genetic variation at the glycosaminoglycan metabolism pathway contributes to the risk of psoriatic arthritis but not psoriasis

Annals of the Rheumatic Diseases

A. Aterido, J. D. Cañete, J. Tornero, C. Ferrándiz, J. Antonio Pinto, J. Gratacós, R. Queiró, C. Montilla, J C. Torre-Alonso, J. J. Pérez-Venegas, A. Fernández Nebro, S. Muñoz-Fernández, C. M. González, D. Roig, P. Zarco, A. Erra, J. Rodríguez, S. Castañeda, E. Rubio, G. Salvador, C. Díaz-Torné, R. Blanco, A. Willisch Domínguez, J. Antonio Mosquera, P. Vela, S. Angel Sánchez-Fernández, H. Corominas, J. Ramírez, P. de la Cueva, E. Fonseca, E. Fernández, L. Puig, E. Dauden, J L. Sánchez-Carazo, J L. López-Estebaranz, D. Moreno, F. Vanaclocha, E. Herrera, F. Blanco, B. Fernández‐Gutiérrez, A. González, C. Pérez-García, M. Alperi‐López, A. Olivé Marques, V. Martínez‐Taboada, I. González-Álvaro, R. Sanmartí, C. Tomás Roura, A. C. García-Montero, S. Bonàs-Guarch, J M. Mercader, D. Torrents, L. Codó, J. Lluis Gelpí, M. López-Corbeto, A. Pluma, M. López-Lasanta, R. Tortosa, N. Palau, D. Absher, R. Myers, S. Marsal, and A. Julià
Multitrait genome association analysis identifies new susceptibility genes for human anthropometric variation in the GCAT cohortBackgroundMethodsResultsConclusion

Journal of Medical Genetics

I. Galván-Femenía, M. Obón-Santacana, D. Piñeyro, M. Guindo-Martínez, X. Duran, A. Carreras, R. Pluvinet, J. Velasco, L. Ramos, S. Aussó, J. M. Mercader, L. Puig, M. Perucho, D. Torrents, V. Moreno, L. Sumoy, and R. de Cid
A cancer-associated polymorphism in ESCRT-III disrupts the abscission checkpoint and promotes genome instability

Proceedings of the National Academy of Sciences

J. B. A. Sadler, D. M. Wenzel, L. K. Williams, M. Guindo-Martínez, S. L. Alam, J. M. Mercader, D. Torrents, K. S. Ullman, W. I. Sundquist, and J. Martin-Serrano