Alfonso Valencia

2022

• Pretrained biomedical language models for clinical NLP in Spanish

  Proceedings of the 21st Workshop on Biomedical Language Processing

  C. PioCarrino, J. Llop-Palao, M. Pàmies, A. Gutiérrez-Fandiño, J. Armengol-Estapé, J. Silveira-Ocampo, A. Valencia, A. Gonzalez-Agirre, and M. Villegas
• Optimizing Dosage-Specific Treatments in a Multi-Scale Model of a Tumor

  Frontiers in Molecular Biosciences

  M. Ponce-de-Leon, A. Montagud, C. Akasiadis, J. Schreiber, T. Ntiniakou, and A. Valencia
• Design and methodological characteristics of studies using observational routinely collected health data for investigating the link between cancer and neurodegenerative diseases: Protocol for a meta-research study

  BMJ Open

  F. Catalá-López, J. A. Driver, M. J. Page, B. Hutton, M. Ridao, C. Berrozpe-Villabona, A. Alonso-Arroyo, C. A. Fraga-Medín, E. Bernal-Delgado, A. Valencia, and R. Tabarés-Seisdedos
• Heterogeneous Infectivity and Pathogenesis of SARS-CoV-2 Variants Beta, Delta and Omicron in Transgenic K18-hACE2 and Wildtype Mice

  Frontiers in Microbiology

  F. Tarrés-Freixas, B. Trinité, A. Pons-Grífols, M. Romero-Durana, E. Riveira-Muñoz, C. Ávila-Nieto, M. Pérez, E. Garcia-Vidal, D. Perez-Zsolt, J. Muñoz-Basagoiti, D. Raïch-Regué, N. Izquierdo-Useros, C. Andrés, A. Antón, T. Pumarola, I. Blanco, M. Noguera-Julian, V. Guallar, R. Lepore, A. Valencia, V. Urrea, J. Vergara-Alert, B. Clotet, E. Ballana, J. Carrillo, J. Segalés, and J. Blanco
• Evaluating the policy of closing bars and restaurants in Cataluña and its effects on mobility and COVID19 incidence

  Scientific Reports

  M. Smith, M. Ponce-de-Leon, and A. Valencia
• Mortality in Persons With Autism Spectrum Disorder or Attention-Deficit/Hyperactivity Disorder

  JAMA Pediatrics

  F. Catalá-López, B. Hutton, M. J. Page, J. A. Driver, M. Ridao, A. Alonso-Arroyo, A. Valencia, D. Macías Saint-Gerons, and R. Tabarés-Seisdedos
• Clinical course impacts early kinetics,magnitude, and amplitude of SARS-CoV-2 neutralizing antibodies beyond 1 year after infection

  Cell Reports Medicine

  E. Pradenas, B. Trinité, V. Urrea, S. Marfil, F. Tarrés-Freixas, R. Ortiz, C. Rovirosa, J. Rodon, J. Vergara-Alert, J. Segalés, V. Guallar, A. Valencia, N. Izquierdo-Useros, M. Noguera-Julian, J. Carrillo, R. Paredes, L. Mateu, A. Chamorro, R. Toledo, M. Massanella, B. Clotet, and J. Blanco
• ExTRI: Extraction of transcription regulation interactions from literature

  Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms

  M. Vazquez, M. Krallinger, F. Leitner, M. Kuiper, A. Valencia, and A. Laegreid
• Detection of oncogenic and clinically actionable mutations in cancer genomes critically depends on variant calling tools

  Bioinformatics

  C. A. Garcia-Prieto, F. Martínez-Jiménez, A. Valencia, and E. Porta-Pardo
• The structural coverage of the human proteome before and after AlphaFold

  PLoS computational biology

  E. Porta-Pardo, V. Ruiz-Serra, S. Valentini, and A. Valencia