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2015

Updates to the Integrated Protein-Protein Interaction Benchmarks: Docking Benchmark Version 5 and Affinity Benchmark Version 2

Journal of Molecular Biology

T. Vreven, I. H. Moal, A. Vangone, B. G. Pierce, P. L. Kastritis, M. Torchala, R. Chaleil, B. Jiménez-García, P. A. Bates, J. Fernandez-Recio, A. M. J. J. Bonvin, and Z. Weng
Inferring the microscopic surface energy of protein-protein interfaces from mutation data.

Proteins

I. H. Moal, J. Dapkūnas, and J. Fernandez-Recio
Comment on 'protein-protein binding affinity prediction from amino acid sequence'.

Bioinformatics

I. H. Moal, and J. Fernandez-Recio
CCharPPI web server: computational characterization of protein-protein interactions from structure.

Bioinformatics

I. H. Moal, B. Jiménez-García, and J. Fernandez-Recio

2014

Blind prediction of interfacial water positions in CAPRI.

Proteins

M. F. Lensink, I. H. Moal, P. A. Bates, P. L. Kastritis, A. S. J. Melquiond, E. Karaca, C. Schmitz, M. van Dijk, A. M. J. J. Bonvin, M. Eisenstein, B. Jiménez-García, S. Grosdidier, A. Solernou, L. Pérez-Cano, C. Pallara, J. Fernández-Recio, J. Xu, P. Muthu, K. Praneeth Kilambi, J. J. Gray, S. Grudinin, G. Derevyanko, J. C. Mitchell, J. Wieting, E. Kanamori, Y. Tsuchiya, Y. Murakami, J. Sarmiento, D. M. Standley, M. Shirota, K. Kinoshita, H. Nakamura, M. Chavent, D. W. Ritchie, H. Park, J. Ko, H. Lee, C. Seok, Y. Shen, D. Kozakov, S. Vajda, P. J. Kundrotas, I. A. Vakser, B. G. Pierce, H. Hwang, T. Vreven, Z. Weng, I. Buch, E. Farkash, H. J. Wolfson, M. Zacharias, S. Qin, H-X. Zhou, S-Y. Huang, X. Zou, J. A. Wojdyla, C. Kleanthous, and S. J. Wodak

2013

The scoring of poses in protein-protein docking: current capabilities and future directions.

BMC bioinformatics

I. H. Moal, M. Torchala, P. A. Bates, and J. Fernández-Recio
Characterizing changes in the rate of protein-protein dissociation upon interface mutation using hotspot energy and organization.

PLoS computational biology

R. Agius, M. Torchala, I. H. Moal, J. Fernández-Recio, and P. A. Bates
Expanding the frontiers of protein-protein modeling: from docking and scoring to binding affinity predictions and other challenges.

Proteins

C. Pallara, B. Jiménez-García, L. Pérez-Cano, M. Romero-Durana, A. Solernou, S. Grosdidier, C. Pons, I. H. Moal, and J. Fernández-Recio
Scoring functions for protein-protein interactions.

Current opinion in structural biology

I. H. Moal, R. Moretti, D. Baker, and J. Fernández-Recio
SwarmDock: a server for flexible protein-protein docking.

Bioinformatics (Oxford, England)

M. Torchala, I. H. Moal, R. A. G. Chaleil, J. Fernández-Recio, and P. A. Bates

Pàgines