Course: Simulation Environments for Life Sciences
Data: 14/Mar/2013 Time: 09:00 - 15/Mar/2013 Time: 18:00
The course will take place in
Barcelona Supercomputing Centre,
within the UPC Campus Nord premises.
Room VS219, Vertex Building (green on the map)
S indicates that the room is 2 floors below the entrance level.
Target group: Level: for trainees with some theoretical and practical knowledge Prerequisites: Basic knowledge of structural bioinformatics Basic knowledge of parallelization strategies Material will be provided during the course, students are welcome to provide their own use cases.
Cost: There is no registration fee. The attendees would need to cover the expenses for travel, accommodation and meals.
Primary tabs
Day 1
Session 1 9am – 11am: Introduction to Molecula Simulations
11:30am – 1pm: Simulation Strategies and HPC
Session 2 2 pm- 3 pm: Setup of protein simulation system using MDWeb (Hands-on)
3 pm- 6 pm: Basic analysis of trajectories (Hands-on)
Day 2
Session 3 9am- 10 am: HPC simulation specifics.
10am- 1 pm: Storage strategies, and data management
Day 2
Session 4 2pm- 3 pm: Guided Hands on
3pm- 6 pm: Free Hands-on