Computational Biology

Primary tabs

Mostrant 61 - 90 resultats de 171

2021

Artificial intelligence in cancer research: learning at different levels of data granularity

Molecular Oncology

D. Cirillo, I. Núñez-Carpintero, and A. Valencia
Simulating SARS-CoV-2 epidemics by region-specific variables and modeling contact tracing app containment

Nature Digital Medicine

A. Ferrari, E. Santus, D. Cirillo, M. Ponce De Leon, N. Marino, M. Teresa Ferretti, A. Santuccion Chadha, N. Mavridis, and A. Valencia

2020

COVID-19 and beyond: a call for action and audacious solidarity to all the citizens and nations, it is humanity’s fight

F1000Research

C. Auffray, R. Balling, N. Blomberg, M. C. Bonaldo, B. Boutron, S. Brahmachari, C. Brechot, A. Cesario, S-J. Chen, K. Clément, D. Danilenko, A. Di Meglio, A. Gelemanović, C. Goble, T. Gojobori, J. D. Goldman, M. Goldman, Y-K. Guo, J. Heath, L. Hood, P. Hunter, L. Jin, H. Kitano, B. Knoppers, D. Lancet, C. Larue, M. Lathrop, M. Laville, A. B. Lindner, A. Magnan, A. Metspalu, E. Morin, L. F. P. Ng, L. Nicod, D. Noble, L. Nottale, H. Nowotny, T. Ochoa, I. N. Okeke, T. Oni, P. Openshaw, M. Oztürk, S. Palkonen, J. T. Paweska, C. Pison, M. H. Polymeropoulos, C. Pristipino, U. Protzer, J. Roca, D. Rozman, M. Santolini, F. Sanz, G. Scambia, E. Segal, I. Serageldin, M. Bento Soares, P. Sterk, S. Sugano, G. Superti-Furga, D. Supple, J. Tegner, M. Uhlen, A. Urbani, A. Valencia, V. Valentini, S. van der Werf, M. Vinciguerra, O. Wolkenhauer, and E. Wouters
Sex differences in oncogenic mutational processes

Nature Communications

C. H. Li, S. D. Prokopec, R. X. Sun, F. Yousif, N. Schmitz, P. C. Boutros, and
Retrospective evaluation of whole exome and genome mutation calls in 746 cancer samples

Nature Communications

M. H. Bailey, W. U. Meyerson, L. Jonathan Dursi, L-B. Wang, G. Dong, W-W. Liang, A. Weerasinghe, S. Li, Y. Li, S. Kelso, G. Saksena, K. Ellrott, M. C. Wendl, D. A. Wheeler, G. Getz, J. T. Simpson, M. B. Gerstein, and L. Ding
INforE: Interactive Cross-platform Analytics for Everyone

CIKM '20: The 29th ACM International Conference on Information and Knowledge ManagementProceedings of the 29th ACM International Conference on Information & Knowledge Management

N. Giatrakos, D. Arnu, T. Bitsakis, A. Deligiannakis, M. Garofalakis, R. Klinkenberg, A. Konidaris, A. Kontaxakis, Y. Kotidis, V. Samoladas, A. Simitsis, G. Stamatakis, F. Temme, M. Torok, E. Yaqub, A. Montagud, M. Ponce-de-Leon, H. Arndt, and S. Burkard
How to Design AI-Driven Clinical Trials in Nuclear Medicine

Seminars in Nuclear Medicine

G. Delso, D. Cirillo, J. D. Kaggie, A. Valencia, U. Metser, and P. Veit-Haibach
GOPHER, an HPC Framework for Large Scale Graph Exploration and Inference

High Performance Computing. ISC High Performance 2020. Lecture Notes in Computer Science

M. JosepFabregó, X. Teruel, V. Gimenez-Abalos, D. Cirillo, D. Garcia-Gasulla, S. Alvarez-Napagao, M. Garcia-Gasulla, E. Ayguadé, and A. Valencia
Sex and gender differences and biases in artificial intelligence for biomedicine and healthcare

Nature Digital Medicine

D. Cirillo, S. Catuara-Solarz, C. Morey, E. Guney, L. Subirats, S. Mellino, A. Gigante, A. Valencia, M. José Rementeria, A. Santuccion Chadha, and N. Mavridis
Interpreting molecular similarity between patients as a determinant of disease comorbidity relationships

Nature Communications

J. Sánchez-Valle, H. Tejero, J. María Fernández, D. Juan, B. Urda-García, S. Capella-Gutierrez, F. Al-Shahrour, R. Tabarés-Seisdedos, A. Baudot, V. Pancaldi, and A. Valencia
Pan-cancer analysis of whole genomes

Nature

2019

Reconstructing complex lineage trees from scRNA-seq data using MERLoTAbstract

Nucleic Acids Research

G. R. Parra, N. Papadopoulos, L. Ahumada-Arranz, J. El Kholtei, N. Mottelson, Y. Horokhovsky, B. Treutlein, and J. Soeding
Local frustration around enzyme active sitesSignificance

Proceedings of the National Academy of Sciences

M. I. Freiberger, B. A. Guzovsky, P. G. Wolynes, G. R. Parra, and D. U. Ferreiro
PROSSTT: probabilistic simulation of single-cell RNA-seq data for complex differentiation processesAbstractSummaryAvailability and implementationSupplementary information

Bioinformatics

N. Papadopoulos, P. R. Gonzalo, and J. Söding
Personalization of Logical Models With Multi-Omics Data Allows Clinical Stratification of Patients

Frontiers in Physiology

J. Béal, A. Montagud, P. Traynard, E. Barillot, and L. Calzone
PhysiBoSS: a multi-scale agent-based modelling framework integrating physical dimension and cell signalling

Bioinformatics

G. Letort, A. Montagud, G. Stoll, R. Heiland, E. Barillot, P. Macklin, A. Zinovyev, and L. Calzone
On the inconsistent treatment of gene-protein-reaction rules in context-specific metabolic models

Bioinformatics

M. Ponce De Leon, I. Apaolaza, A. Valencia, and F. J. Planes
Patient Dossier: Healthcare queries over distributed resources

PLoS computational biology

M. Vázquez, and A. Valencia
The bio.tools registry of software tools and data resources for the life sciences

Genome Biology

J. Ison, H. Ienasescu, P. Chmura, E. Rydza, H. Ménager, M. Kalaš, V. Schwämmle, B. Grüning, N. Beard, R. Lopez, S. Duvaud, H. Stockinger, B. Persson, R. Svobodová Vařeková, T. Raček, J. Vondrášek, H. Peterson, A. Salumets, I. Jonassen, R. Hooft, T. Nyrönen, A. Valencia, S. Capella, J. Gelpí, F. Zambelli, B. Savakis, B. Leskošek, K. Rapacki, C. Blanchet, R. Jimenez, A. Oliveira, G. Vriend, O. Collin, J. van Helden, P. Løngreen, and S. Brunak
Precision medicine needs pioneering clinical bioinformaticians

Briefings in Bioinformatics

G. Gómez-López, J. Dopazo, J. C. Cigudosa, A. Valencia, and F. Al-Shahrour
Molecular Inverse Comorbidity between Alzheimer’s Disease and Lung Cancer: New Insights from Matrix Factorization

International Journal of Molecular Sciences

A. Greco, J. Sanchez Valle, V. Pancaldi, A. Baudot, E. Barillot, M. Caselle, A. Valencia, A. Zinovyev, and L. Cantini
Interactive Extreme: Scale Analytics Towards Battling Cancer

IEEE Technology and Society Magazine

N. Giatrakos, N. Katzouris, A. Deligiannakis, A. Artikis, M. Garofalakis, G. Paliouras, H. Arndt, R. Grasso, R. Klinkenberg, M. Ponce De Leon, G. Gaetano Tartaglia, A. Valencia, and D. Zissis
Association of Anorexia Nervosa With Risk of Cancer

JAMA Network Open

F. Catalá-López, J. Forés-Martos, J. A. Driver, M. J. Page, B. Hutton, M. Ridao, A. Alonso-Arroyo, D. Macías Saint-Gerons, R. Gènova-Maleras, J. M. Valderas, E. Vieta, A. Valencia, and R. Tabarés-Seisdedos
DNA methylation profiling of hepatosplenic T-cell lymphoma

Haematologica

A. K. Bergmann, V. Fataccioli, G. Castellano, N. Martin-Garcia, L. Pelletier, O. Ammerpohl, J. Bergmann, J. Bhat, E. Carrillo-d Pau, J. I. Martin-Subero, A. B. Moffitt, A. Valencia, H-H. Oberg, D. Wesch, S. Jayne, M. J. S. Dyer, D. Kabelitz, P. Gaulard, and R. Siebert
Transcriptomic metaanalyses of autistic brains reveals shared gene expression and biological pathway abnormalities with cancer

Molecular Autism

J. Forés-Martos, F. Catalá-López, J. Sánchez-Valle, K. Ibáñez, H. Tejero, H. Palma-Gudiel, J. Climent, V. Pancaldi, L. Fañanás, C. Arango, M. Parellada, A. Baudot, D. Vogt, J. L. Rubenstein, A. Valencia, and R. Tabarés-Seisdedos
Intronic CNVs and gene expression variation in human populations

PLOS Genetics

M. Rigau, D. Juan, A. Valencia, and D. Rico
Big data analytics for personalized medicine

Current Opinion in Biotechnology

D. Cirillo, and A. Valencia

2018

Aberrant ERBB4-SRC Signaling as a Hallmark of Group 4 Medulloblastoma Revealed by Integrative Phosphoproteomic Profiling

Cancer Cell

A. Forget, L. Martignetti, S. Puget, L. Calzone, S. Brabetz, D. Picard, A. Montagud, S. Liva, A. Sta, F. Dingli, G. Arras, J. Rivera, D. Loew, A. Besnard, J. Lacombe, M. Pagès, P. Varlet, C. Dufour, H. Yu, A. L. Mercier, E. Indersie, A. Chivet, S. Leboucher, L. Sieber, K. Beccaria, M. Gombert, F. D. Meyer, N. Qin, J. Bartl, L. Chavez, K. Okonechnikov, T. Sharma, V. Thatikonda, F. Bourdeaut, C. Pouponnot, V. Ramaswamy, A. Korshunov, A. Borkhardt, G. Reifenberger, P. Poullet, M. D. Taylor, M. Kool, S. M. Pfister, D. Kawauchi, E. Barillot, M. Remke, and O. Ayrault
The Immune Landscape of Cancer

Immunity

V. Thorsson, D. L. Gibbs, S. D. Brown, D. Wolf, D. S. Bortone, T-H. Ou Yang, E. Porta-Pardo, G. F. Gao, C. L. Plaisier, J. A. Eddy, et al.
Perspective on Oncogenic Processes at the End of the Beginning of Cancer Genomics

Cell

L. Ding, M. H. Bailey, E. Porta-Pardo, V. Thorsson, A. Colaprico, D. Bertrand, D. L. Gibbs, A. Weerasinghe, K-lin. Huang, C. Tokheim, et al.

Pàgines