Salvador Capella Gutierrez

2024

• Rare disease research workflow using multilayer networks elucidates the molecular determinants of severity in Congenital Myasthenic Syndromes

  Nature Communications

  I. Núñez-Carpintero, M. Rigau, M. Bosio, E. O'Connor, S. Spendiff, Y. Azuma, A. Topf, R. Thompson, T. Chamova, I. Tournev, V. Guergueltcheva, S. Laurie, S. Beltran, S. Capella-Gutierrez, D. Cirillo, H. Lochmüller, and A. Valencia
• WOMBAT-P: Benchmarking Label-Free Proteomics Data Analysis Workflows

  Journal of Proteome Research

  D. Bouyssié, P. Altıner, S. Capella-Gutierrez, J. M. Fernández, Y. Paco Hagemeijer, P. Horvatovich, M. Hubálek, F. Levander, P. Mauri, M. Palmblad, W. Raffelsberger, L. Rodriguez-Navas, D. Di Silvestre, B. Tibor Kunkli, J. Uszkoreit, Y. Vandenbrouck, J. Antonio Vizcaíno, D. Winkelhardt, and V. Schwämmle

2023

• RegulonDB v12.0: a comprehensive resource of transcriptional regulation in E. coli K-12

  Nucleic Acids Research

  H. Salgado, S. Gama-Castro, P. Lara, C. Mejia-Almonte, G. Alarcón-Carranza, A. G. López-Almazo, F. Betancourt-Figueroa, P. Peña-Loredo, S. Alquicira-Hernández, D. Ledezma-Tejeida, L. Arizmendi-Zagal, F. Mendez-Hernandez, A. K. Diaz-Gomez, E. Ochoa-Praxedis, L. J. Muñiz-Rascado, J. S. García-Sotelo, F. A. Flores-Gallegos, L. Gómez, C. Bonavides-Martínez, V. M. del Moral-Chávez, A. J. Hernández-Alvarez, A. Santos-Zavaleta, S. Capella-Gutierrez, J. Lluis Gelpí, and J. Collado-Vides
• The FAIR Cookbook - the essential resource for and by FAIR doersAbstractThe FAIR Cookbook - the essential resource for and by FAIR doers

  Scientific Data

  P. Rocca-Serra, W. Gu, V. Ioannidis, T. Abbassi-Daloii, S. Capella-Gutierrez, I. Chandramouliswaran, A. Splendiani, T. Burdett, R. T. Giessmann, D. Henderson, D. Batista, I. Emam, Y. Gadiya, L. Giovanni, E. Willighagen, C. Evelo, A. J. G. Gray, P. Gribbon, N. Juty, D. Welter, K. Quast, P. Peeters, T. Plasterer, C. Wood, E. van der Horst, D. Reilly, H. van Vlijmen, S. Scollen, A. Lister, M. Thurston, R. Granell, G. Backianathan, S. Baier, A. Cambon Thomsen, M. Cook, M. Courtot, M. d’Arcy, K. Dauth, E. Marin del Piico, L. Garcia, U. Goldmann, V. Grouès, D. J. B. Clarke, E. Lefloch, I. Liyanage, P. Papadopoulos, C. Pommier, E. Reynares, F. Ronzano, A. Delfin-Rossaro, V. Sagatopam, A. Sedani, V. Sedlyarov, L. Shilova, S. Singh, J. Strubel, K. van Bochove, Z. Warnes, P. Woollard, F. Xu, A. Zaliani, and S-A. Sansone
• eTRANSAFE: data science to empower translational safety assessment

  Nature Reviews Drug Discovery

  F. Sanz, F. Pognan, T. Steger-Hartmann, C. Díaz, S. Asakura, A. Amberg, N. Bécourt-Lhote, N. Blomberg, N. Bosc, K. Briggs, F. Bringezu, C. Brulle-Wohlhueter, S. Brunak, R. Bueters, G. Callegaro, S. Capella-Gutierrez, E. Centeno, J. Corvi, M. T. D. Cronin, P. Drew, G. Duchateau-Nguyen, G. F. Ecker, S. Escher, E. Felix, M. Ferreiro, M. Frericks, L. I. Furlong, R. Geiger, C. George, M. Grandits, D. Ivanov-Draganov, J. Kilgour-Christie, T. Kiziloren, J. A. Kors, N. Koyama, A. Kreuchwig, A. R. Leach, M-A. Mayer, P. Monecke, W. Muster, C. Miyamoto Nakazawa, G. Nicholson, R. Parry, M. Pastor, J. Piñero, N. Oberhauser, J. Manuel Ramírez-Anguita, A. Rodrigo, A. Smajic, M. Schaefer, S. Schieferdecker, I. Soininen, E. Terricabras, P. Trairatphisan, S. C. Turner, A. Valencia, B. van de Water, J. L. van der Lei, E. M. van Mulligen, E. Vock, and D. Wilkinson
• DEBBIE: The Open Access Database of Experimental Scaffolds and Biomaterials Built Using an Automated Text Mining Pipeline

  Advanced Healthcare Materials

  J. O. Corvi, A. McKitrick, J. M. Fernández, C. V. Fuenteslópez, J. L. Gelpí, M‐P. Ginebra, S. Capella‐Gutierrez, and O. Hakimi
• The landscape of expression and alternative splicing variation across human traits

  Cell Genomics

  R. García-Pérez, J. Miguel Ramirez, A. Ripoll-Cladellas, R. Chazarra-Gil, W. Oliveros, O. Soldatkina, M. Bosio, P. Joris Rognon, S. Capella-Gutierrez, M. Calvo, F. Reverter, R. Guigó, F. Aguet, P. G. Ferreira, K. G. Ardlie, and M. Melé
• The landscape of expression and alternative splicing variation across human traits

  Cell Genomics

  R. García-Pérez, J. Miguel Ramírez, A. Ripoll-Cladellas, R. Chazarra-Gil, W. Oliveros, O. Soldatkina, M. Bosio, P. Joris Rognon, S. Capella-Gutierrez, M. Calvo, F. Reverter, R. Guigó, F. Aguet, P. G. Ferreira, K. G. Ardlie, and M. Melé

2022

• Automatic, Efficient and Scalable Provenance Registration for FAIR HPC Workflows

  2022 IEEE/ACM Workshop on Workflows in Support of Large-Scale Science (WORKS)2022 IEEE/ACM Workshop on Workflows in Support of Large-Scale Science (WORKS)

  R. Sirvent, J. Conejero, F. Lordan, J. Ejarque, L. Rodriguez-Navas, J. M. Fernández, S. Capella-Gutierrez, and R. M. Badia
• Community-driven ELIXIR activities in single-cell omics

  F1000Research

  P. Czarnewski, A. Mahfouz, R. A. Calogero, P. M. Palagi, L. Portell-Silva, A. Gonzalez-Uriarte, C. Soneson, T. Burdett, B. Szomolay, P. Videm, H-R. Hotz, I. Papatheodorou, J. M. Hancock, B. Grüning, W. Haerty, R. Krause, S. Capella-Gutierrez, B. Leskošek, L. Alessandri, M. Arigoni, T. Rezen, A. Botzki, P. Ferk, J. Lindvall, K. F. Heil, N. Ishaque, and E. Korpelainen