Anais Baudot

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I'm a CNRS researcher in Computational Biology, leading the group dedicated to Networks and Systems Biology for Diseases in the Marseille Medical Genetic Unit (MMG), with an affiliation to the BSC. My main interests are to develop artificial intelligence and digital approaches to study human genetic diseases, with a particular emphasis on rare diseases.

The full list of my publication is available here.

Selected publications :

Pio-Lopez L, Valdeolivas A, Tichit L, Remy É, Baudot A. MultiVERSE: a multiplex and multiplex-heterogeneous network embedding approach. Sci Rep. 2021 Dec;11(1):8794.
Cantini L, Zakeri P, Hernandez C, Naldi A, Thieffry D, Remy E, et al. Benchmarking joint multi-omics dimensionality reduction approaches for the study of cancer. Nature Communications [Internet]. 2021 Dec [cited 2021 Jan 5];12(1). Available from:
Novoa-del-Toro EM, Mezura-Montes E, Vignes M, Térézol M, Magdinier F, Tichit L, et al. A multi-objective genetic algorithm to find active modules in multiplex biological networks. Jensen P, editor. PLoS Comput Biol. 2021 Aug 30;17(8):e1009263.


Forés-Martos J, Catalá-López F, Sánchez-Valle J, Ibáñez K, Tejero H, Palma-Gudiel H, Climent J, Pancaldi V, Fañanás L, Arango C, Parellada M, Baudot A, Vogt D, Rubenstein JL, Valencia A, Tabarés-Seisdedos R. Transcriptomic metaanalyses of autistic brains reveals shared gene expression and biological pathway abnormalities with cancer. Mol Autism. 2019 Apr 8;10:17. doi:

Valdeolivas A, Tichit L, Navarro C, Perrin S, Odelin G, Levy N, Cau P, Remy E, Baudot A. Random walk with restart on multiplex and heterogeneous biological networks. Bioinformatics. 2019 Feb 1;35(3):497-505. doi:10.1093/bioinformatics/bty637

Sánchez-Valle J, Tejero H, Ibáñez K, Portero JL, Krallinger M, Al-Shahrour F, Tabarés-Seisdedos R, Baudot A, Valencia A. A molecular hypothesis to explain direct and inverse co-morbidities between Alzheimer's Disease, Glioblastoma and Lung cancer. Sci Rep. 2017 Jun 30;7(1):4474. doi: 10.1038/s41598-017-04400-6

Tabarés-Seisdedos R, Baudot A. Editorial: Direct and Inverse Comorbidities Between Complex Disorders. Front Physiol. 2016 Mar 30;7:117. doi:10.3389/fphys.2016.00117

Ibáñez K, Boullosa C, Tabarés-Seisdedos R, Baudot A, Valencia A. Molecular evidence for the inverse comorbidity between central nervous system disorders and cancers detected by transcriptomic meta-analyses. PLoS Genet. 2014 Feb 20;10(2):e1004173. doi: 10.1371/journal.pgen.1004173

Glaab E, Baudot A, Krasnogor N, Schneider R, Valencia A. EnrichNet:network-based gene set enrichment analysis. Bioinformatics. 2012 Sep15;28(18):i451-i457. doi: 10.1093/bioinformatics/bts389