Publications

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P. Jiménez-Guerrero, Jorba, O., Pay, M. T., Montávez, J. P., Jerez, S., Gómez-Navarro, J. J., and Baldasano, J. M., Comparison of two different sea-salt aerosol schemes as implemented in air quality models applied to the Mediterranean Basin, Atmospheric Chemistry and Physics, vol. 11, no. 10. COPERNICUS GESELLSCHAFT MBH , GERMANY, pp. 4833–4850, 2011.
M. Milovanovic, Unsal, O., Cristal, A., Stipić, S., Zyulkyarov, F., and Valero, M., Compile time support for using transactional memory in C/C++ applications, in The 11th Annual Workshop on the Interaction between Compilers and Computer Architecture (INTERACT-11), Phoenix, AR, United States, 2007, pp. 16–23.
S. Royuela, Ferrer, R., Duran, A., and Martorell, X., Compiler Analysis for Improving OpenMP Code Generation, ACACES 2011. Poster Abstracts. Advanced Computer Architecture and Compilation for Embedded Systems. 2011.
S. Royuela, Duran, A., and Martorell, X., Compiler automatic discovery of OmpSs task dependencies, Proceedings of the workshop on Languages and Compilers for Parallel Computing. 2012.
I. Mattis, Müller, D., Baars, H., Tegen, I., Meier, J., Mona, L., Pappalardo, G., Amodeo, A., D'Amico, G., Stohl, A., Wang, X., Molero-Menéndez, F., Sicard, M., Rodríguez, A., Baldasano, J. M., Grigorov, I., and Giannakaki, E., Complementary Use of EARLINET, CALIPSO and AERONET Observations: Case Study July 24, 2006. 24st International Laser Radar Conference (ILRC24), Boulder (USA), 2008.
D. Carrera, Guitart, J., Torres, J., Ayguadé, E., and Labarta, J., Complete Instrumentation Requirements for Performance Analysis of Web based Technologies, IEEE International Symposium on Performance Analysis of Systems and Software (ISPASS'03). Austin, USA, pp. 166-175, 2003.
R. E. Mamouri, Ansmann, A., Nisantzi, A., Schwarz, A., Basart, S., Kokkalis, P., Baldasano, J. M., and Hadjimitsis, D. G., Complex vertical aerosol layering of natural and anthropogenic particles over the Southeastern Mediterranean: observations with Earlinet lidar and Aeronet photometer at Lemesos, Cyprus and comparison with transport modeling results, 12th IGAC2012 conference, “Atmospheric Chemistry in the Anthropocene” , vol. . International Global Atmospheric Chemistry (IGAC), 17-21 September, 2012. Beijing (China), 2012.
R. E. Mamouri, Nisantzi, A., Hadjimitsis, D. G., Ansmann, A., Schwarz, A., Basart, S., and Baldasano, J. M., Complex Vertical Layering and Mixing of Aerosol over the Eastern Mediterranean: Active and passive remote sensing at the Cyprus University of Technology, First International Conference on Remote Sensing and Geoinformation of Environment RSCy 2013, vol. . European Space Agency and Cyprus University of Technology, 8-10 April 2013. Paphos, Cyprus, 2013.
R. E. Mamouri, Nisantzi, A., Hadjimitsis, D. G., Ansmann, A., Schwarz, A., Basart, S., and Baldasano, J. M., Complex Vertical Layering and Mixing of Aerosol over the Eastern Mediterranean: Active and passive remote sensing at the Cyprus University of Technology, in Proc. SPIE 8795, First International Conference on Remote Sensing and Geoinformation of the Environment (RSCy2013), vol. 8795, 5 August 2013. Paphos, Cypurs: SPIE Digital Library, 2013.
O. J. Santana, Falcón, A., Ramirez, A., and Valero, M., A Complexity-Effective Decoding Architecture Based on Instruction Streams, Workshop on Complexity-Effective Design (WCED). 2004.
C. Acosta, Falcón, A., Ramirez, A., and Valero, M., A Complexity-Effective Simultaneous Multithreading Architecture, 34th International Conference on Parallel Processing (ICPP 2005). 2005.
C. Acosta, Falcón, A., Ramirez, A., and Valero, M., Complexity-Effectiveness in Multithreading Architectures, In 2005 Advanced Computer Architecture and Compilation for Embedded Systems (ACACES-2005). L'Aquila (Italy), pp. 79-82, 2005.
E. Tejedor, Badia, R. M., Kielmann, T., and Getov, V., A Component-Based Integrated Toolkit. CoreGRID Workshop on Grid Programming Model, Grid and P2P Systems Architecture, Grid Systems, Tools and Environments, Heraklion, Crete (Greece), 2007.
E. Tejedor, Badia, R. M., Kielmann, T., and Getov, V., A Component-Based Integrated Toolkit, Making Grids Work, CoreGRID series, 2008.
A. Soret, Jiménez-Guerrero, P., and Baldasano, J. M., Comprehensive air quality planning for the Barcelona Metropolitan Area through traffic management, Atmospheric Pollution Research, vol. 2, no. 3. Turkish National Committee for Air Pollution Research and Control (TUNCAP), TURKEY, pp. 255-266, 2011.
O. J. Santana, Falcón, A., Fernández, E., Medina, P., Ramirez, A., and Valero, M., A Comprehensive Analysis of Indirect Branch Prediction, 4th International Symposium on High Performance Computing (ISHPC-4). Springer-Verlag, Kansai Science City (Japan), pp. 133-141, 2002.
F. Amato, Nava, S., Lucarelli, F., Querol, X., Alastuey, A., Baldasano, J. M., and Pandolfi, M., A comprehensive assessment of PM emissions from paved roads: Real-world Emission Factors and intense street cleaning trials, Science of The Total Environment, vol. 408, no. 20. ELSEVIER SCIENCE BV , NETHERLANDS, pp. 4309-4318, 2010.
V. Moncunill, González, S., Beà, S., Andrieux, L. O., Salaverria, I., Royo, C., Martinez, L., Puiggròs, M., Segura-Wang, M., Stütz, A. M., Navarro, A., Royo, R., Gelpí, J. L., Gut, I. G., López-Otín, C., Orozco, M., Korbel, J. O., Campo, E., Puente, X. S., and Torrents, D., Comprehensive characterization of complex structural variations in cancer by directly comparing genome sequence reads., Nat Biotechnol, vol. 32, no. 11. pp. 1106-12, 2014.
A. Cristal, Santana, O. J., and Valero, M., A Comprehensive Description of Kilo-Instruction Processors, in 5o Congreso Nacional de Computación, Mexico City, Mexico, 2004, pp. 144–154.
J. F Carmona, Davalos, V., Vidal, E., Gomez, A., Heyn, H., Hashimoto, Y., Vizoso, M., Martinez-Cardus, A., Sayols, S., Ferreira, H. J., Sánchez-Mut, J. V., Morán, S., Margelí, M., Castella, E., Berdasco, M., Stefansson, O. A., Eyfjord, J. E., Gonzalez-Suarez, E., Dopazo, J., Orozco, M., Gut, I. G., and Esteller, M., A comprehensive DNA methylation profile of epithelial-to-mesenchymal transition., Cancer Res, vol. 74, no. 19. pp. 5608-19, 2014.
E. Akpinar, Tomić, S., Cristal, A., Unsal, O., and Valero, M., A Comprehensive Study of Conflict Resolution Policies in Hardware Transactional Memory, 6th ACM SIGPLAN Workshop on Transactional Computing (TRANSACT). San Jose Convention Center, United States, 2011.
D. Lezzi, Rafanell, R., Lordan, F., Tejedor, E., and Badia, R. M., COMPSs in the VENUS-C Platform: enabling e-Science applications on the Cloud, 5th Iberian Grid Infrastructure Conference (IBERGRID 2011). Netbiblo, Santander, Spain, pp. 73–84, 2011.
E. Monza, Computation and experiment meet together: a powerful approach to rational re-design of oxidoreductases, OxiZymes2014. Vienna, Austria . 2014.
A. Folch and Jorba, O., Computation of Volcanic ash Concentration at Long Distances Using an Eulerian Approach. Is it Worthy?. AGU Western Pacific Geophysics Meeting Cairns, Australia, 2008.
A. Folch and Jorba, O., Computation of Volcanic ash Concentration at Long Distances Using an Eulerian Approach. Is it Worthy?. IAVCEI General Assembly, Reykjavik, 2008.
M. Orozco, Computational and Medicinal Chemistry. American Chemical Society Meeting, 2009.
M. Orozco, Computational challenges in Life Sciences. HPC-Prace meeting, 2010.
V. Guallar, Jacobson, M., McDermott, A., and Friesner, R. A., Computational modeling of the catalytic reaction in triosephosphate isomerase., Journal of molecular biology, vol. 337, no. 1. pp. 227-39, 2004.
D. J. Doorly, Taylor, D., Houzeaux, G., Rennier, C., Tolley, N., and Vázquez, M., Computational Modelling of Airflow in the Respiratory Tract, PARCFD2011. Barcelona (Spain), 2011.
F. C. Lombardo, Mazzitelli, F. D., Vázquez, M., and Villar, P., Computing the Casimir energy using the point-matching method, Phys. Rev. D, vol. 80. American Physical Society, p. 065018, 2009.
B. Islam, Sgobba, M., Laughton, C., Orozco, M., Sponer, J., Neidle, S., and Haider, S., Conformational dynamics of the human propeller telomeric DNA quadruplex on a microsecond time scale., Nucleic acids research, vol. 41, no. 4. pp. 2723-35, 2013.
A. N. Naganathan and Orozco, M., The conformational landscape of an intrinsically disordered DNA-binding domain of a transcription regulator., The journal of physical chemistry. B, vol. 117, no. 44. pp. 13842-50, 2013.
G. Andreotti, de Vaca, I. Cabeza, Poziello, A., Monti, M. Chiara, Guallar, V., and Cubellis, M. Vittoria, Conformational Response to Ligand Binding in Phosphomannomutase2 INSIGHTS INTO INBORN GLYCOSYLATION DISORDER, Journal of Biological Chemistry, vol. 289. American Society for Biochemistry and Molecular Biology, pp. 34900–34910, 2014.
C. Pallara, Rueda, M., and Fernández-Recio, J., Conformational selection mechanism in protein-protein association: insights from docking, II Jornada de Bioinformàtica i Biologia Computacional (Barcelona). 2014.
L. Pérez-Cano, Eliahoo, E., Lasker, K., Wolfson, H. J., Glaser, F., Manor, H., Bernadó, P., and Fernández-Recio, J., Conformational transitions in human translin enable nucleic acid binding., Nucleic acids research, vol. 41, no. 21. pp. 9956-66, 2013.
H. Saneyoshi, Mazzini, S., Aviñó, A., Portella, G., González, C., Orozco, M., Marquez, V. E., and Eritja, R., Conformationally rigid nucleoside probes help understand the role of sugar pucker and nucleobase orientation in the thrombin-binding aptamer. Nucleic Acids Res. 2009 September; 37(17): 5589?5601, 2009.
M. Rueda, Ferrer, C., Meyer, T., Pérez, A., Camps, J., Hospital, A., Gelpí, J. L., and Orozco, M., A consensous view to Protein Dynamics. Proc. Natl. Acad. Sci. USA, 2007.
M. Jamroz, Orozco, M., Kolinski, A., and Kmiecik, S., Consistent View of Protein Fluctuations from All-Atom Molecular Dynamics and Coarse-Grained Dynamics with Knowledge-Based Force-Field. JCT, 2013.
L. Kosmidis, Abella, J., Quiñones, E., Wartel, F., Farrall, G., and Cazorla, F. J., Containing Timing-Related Certification Cost in Automotive Systems Deploying Complex Hardware, 51th Design Automation Conference (DAC) 2014. San Francisco, United States, pp. 1–6, 2014.
R. González, Content Aware Architectures, Universitat Politècnica de Catalunya (UPC), 2009.
R. González, Cristal, A., Ortega, D., Veidenbaum, A., and Valero, M., A Content Aware Integer Register File Organization, in International Symposium on Computer Architecture (ISCA 2004), München, Germany, 2004, pp. 314–324.
R. González, Cristal, A., Ortega, D., and Valero, M., Content Aware Register File Organisation. Computer Architecture Department, Universitat Politècnica de Catalunya (UPC), 2003.
G. Fernandez, Abella, J., Quiñones, E., Rochange, C., Vardanega, T., and Cazorla, F. J., Contention in Multicore Hardware Shared Resources: Understanding of the State of the Art, 14th International Workshop on Worst-Case Execution Time Analysis. OASIcs, Madrid, Spain, pp. 31–42, 2014.
A. Jokanovic, Minkenberg, C., Sancho, J. C., Beivide, R., Rodriguez, G., and Labarta, J., Contention-aware Node Allocation Policy for High-performance Capacity Systems, Proceedings of the 2012 Interconnection Network Architecture: On-Chip, Multi-Chip Workshop. ACM, New York, NY, USA, pp. 5–8, 2012.
P. Fuentes, Vallejo, E., Garcia, M., Beivide, R., Rodriguez, G., Minkenberg, C., and Valero, M., Contention-based Nonminimal Adaptive Routing in High-radix Networks, 29th IEEE International Parallel & Distributed Processing Symposium (IPDPS-2015). IEEE, India, 2015.
M. Orozco, Marchán, I., and Soteras, I., Continuum analysis of conformational sampling in solution, Continuum Solvation Models in Chemical Physics: Theory and Application, 2007.
M. Gonçalves, Jiménez-Guerrero, P., and Baldasano, J. M., Contribution of Atmospheric Processes Affecting the Dynamics of Air Pollution in Coastal Urban Areas of the Southwestern Mediterranean: Case of Barcelona. Harbours, Air Quality and Climate Change-HAQCC2008, Rotterdam (The Netherlands), 2008.
M. Gonçalves, Jiménez-Guerrero, P., and Baldasano, J. M., Contribution of atmospheric processes affecting the dynamics of air pollution in South-Western Europe during a typical summertime photochemical episode, Atmospheric Chemistry and Physics, vol. 9, no. 3. COPERNICUS GESELLSCHAFT MBH , GERMANY, pp. 849-864, 2009.
M. Gonçalves, Jiménez-Guerrero, P., and Baldasano, J. M., Contribution of atmospheric processes to photochemical pollution by using a process analysis tool in the north-eastern and central Iberian Peninsula. ACCENT/GLOREAM Workshop, Berlin (Germany), 2008.
P. Jiménez-Guerrero, Pérez, C., Jorba, O., and Baldasano, J. M., Contribution of Saharan dust in an integrated air quality system and its on-line assessment, Geophysical Research Letters, vol. 35, no. L03814. AMER GEOPHYSICAL UNION, UNITED STATES, pp. 1-6, 2008.

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