Publications

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C
Owen, H., Houzeaux, G., Vázquez, M., Samaniego, C. & Calmet, H. Coupling free surface turbulent fluid flow and rigid body motion with the Parallel Finite Element code Alya. (2013).
Tolosana-Delgado, R., Soret, A., Jorba, O., Baldasano, J.M. & Sánchez-Arcilla, A. Coupling of WRF meteorological model to WAM spectral wave model through sea surface roughness at the Balearic Sea: impact on wind and wave forecasts. 9th European Geosciences Union Conference (EGU) General Assembly. Geophysical Research Abstracts 14, (2012).
Luque, C., Moretó, M., Cazorla, F.J., Gioiosa, R., Buyuktosunoglu, A. & Valero, M. CPU Accounting for Multicore Processors. IEEE Transactions on Computers 61, 251–264 (2012).
Luque, C., Moreto, M., Cazorla, F., Gioiosa, R., Buyuktosunoglu, A. & Valero, M. CPU accounting in CMP Processors. (2009).
Miranda, A. & Cortes, T. CRAID: Online RAID Upgrades using Dynamic Hot Data Reorganization. 12th USENIX Conference on File and Storage Technologies (2014).
Ayguadé, E. & Torres, J. Creating Power-Aware Middleware for Energy-Efficient Data Centres. (2009).
Velasco, L., Asensio, A., Castro, A., Berral, J.L., Carrera, D., Lopez, V. & Fernandez-Palacios, J.P. Cross-Stratum Orchestration and Flexgrid Optical Networks for Data Center Federations. IEEE Network 7, 23–30 (2013).
Kowalcyk, L., Ratera, M., Paladino, A., Bartoccioni, P., Errasti, E., Valencia, E., Portella, G., Zorzano, A., Fita, I., Orozco, M., Carpena, X., Vázquez-Ibar, J.L. & PalacÍn, M. Crystal structure of a substrate-bound amino acid antiporter in the outward open conformation: mechanism of substrate recognintion and transport. (2011).
Gelado, I., Kelm, J.H., Ryoo, S., Lumetta, S.S., Navarro, N. & Hwu, W.-mei CUBA: an Architecture for Efficient CPU/co-processor Data Communication. 22nd International Conference on Supercomputing (2008).
Baldasano, J.M. Current and planned activities of the Regional Center SDSWAS for North Africa, Europe and Middle East. (2009).
Cuevas, E. & Baldasano, J.M. Current and Planned Activities of the Sand and Dust Storm Warning Advisory and Assessment System Regional Center for Northern Africa, Europe and Middle East. (2009).
Terradellas, E., Baldasano, J.M., Cuevas, E. & Martínez, M.A. Current and planned activities of the WMO SDS-WAS Regional Center for Northern Africa, Middle East and Europe. (2010).
Guallar, V. & Friesner, R.A. Cytochrome P450CAM enzymatic catalysis cycle: a quantum mechanics/molecular mechanics study. Journal of the American Chemical Society 126, 8501-8 (2004).
D
González-Férez, P., Piernas, J. & Cortes, T. DADS: Dynamic and Automatic Disk Scheduling. 27th Symposium On Applied Computing (2012).
Orozco, M. Data deluge in genomics”. Roche-Instituto Principe Felipe meeting on “Sequencing in the clinical practices”. (2013).
Otero, B., Cela, J.M., Badia, R.M. & Labarta, J. Data Distribution Strategies for Domain Decomposition Applications in Grid Environments. (2005).
Gelpí, J.L. Data Management in Massive Genomic Projects. IV International Symposium on BIOMEDICAL INFORMATICS IN EUROPE (2011).
Pavlovic, M., Puzovic, N. & Ramirez, A. Data placement in HPC architectures with heterogeneous off-chip memory. 31nd IEEE International Conference on Computer Design 193–200 (2013).
Orozco, M. Datamining in cancer genome projects. Why a supercomputer center is needed. (2010).at <http://www.sc.ehu.es/ccwbayes/SymposiumBIIE/>
Noy, A., Meyer, T., Rueda, M., Ferrer, C., Valencia, A., Pérez, A., de la Cruz, X., López-Bes, J.M., Luque, F.J. & Orozco, M. Datamining of molecular dynamics trajectories of nucleic acids. (2006).
Jorba, O., Pandolfi, M., Spada, M., Baldasano, J.M., Pey, J., Alastuey, A., Arnold, D., Sicard, M., Artiñano, B., Revuelta, M.A. & Querol, X. The DAURE field campaign: meteorological overview. Atmospheric Chemistry and Physics Discussion 11, 4953-5001 (2011).
Cazorla, F., Fernández, E., Ramirez, A. & Valero, M. DCache Warn: An I-Fetch Policy To Increase SMT Efficiency. 18th International Parallel and Distributed Processing Symposium (IPDPS-2004) (2004).
Polo, J., Becerra, Y., Carrera, D., Steinder, M., Whalley, I., Torres, J. & Ayguadé, E. Deadline-based MapReduce Workload Management. IEEE Transactions on Network and Service Management 10, 231–244 (2013).
Acosta, C., Galluzzi, M., Vajapeyam, S., Ramirez, A. & Valero, M. Dealing with Billions of Transistors. XIV Jornadas de Paralelismo 547-552 (2003).
Zyulkyarov, F., Harris, T., Unsal, O., Cristal, A. & Valero, M. Debugging Programs that use Atomic Blocks and Transactional Memory. 15th ACM SIGPLAN Annual Symposium on Principles and Practice of Parallel Programming (PPoPP 2010) (2010).
Queralt, A. & Teniente, E. Decidable Reasoning in UML Schemas with Constraints. CAiSE 281-295 (2008).
Raimondi, F., Orozco, M. & Fanelli, F. Deciphering the deformation modes associated with function retention and specialization in members of the Ras Superfamily. (2010).at <http://www.cell.com/structure/abstract/S0969-2126(10)00033-X>
Bertran, R., González, M., Martorell, X., Navarro, N. & Ayguadé, E. Decomposable and Responsive Power Models for Multicore Processors using Performance Counters. (2010).at <http://doi.acm.org/10.1145/1810085.1810108>
Jalle, J., Abella, J., Quiñones, E., Fossati, L., Zulianello, M. & Cazorla, F.J. Deconstructing Bus Access Control Policies for Real-Time Multicores. 8th IEEE International Symposium on Industrial Embedded Systems (SIES) 31–38 (2013).doi:10.1109/SIES.2013.6601468
Pericàs, M., Cristal, A., González, R., Jiménez, D. & Valero, M. A decoupled KILO-instruction processor. The 12th International Symposium on High-Performance Computer Architecture (HPCA-12) 53–64 (2006).at <http://capinfo.e.ac.upc.edu/PDFs/dir13/file003261.pdf>
Pericàs, M., Cristal, A., González, R. & Valero, M. Decoupled State-Execute Architecture. 6th International Symposium on High Performance Computing (ISHPC-VI 2005) 68–78 (2005).at <http://capinfo.e.ac.upc.edu/PDFs/dir15/file003263.pdf>
García-Fandiño, R., Bernadó, P., Ayuso-Tejedor, S., Sancho, J. & Orozco, M. Defining the nature of thermal intermediate in 3 state folding proteins: apoflavodoxin, a study case. PLoS computational biology 8, e1002647 (2012).
Lohner, R., Mut, F., Cebral, J., Aubry, R. & Houzeaux, G. Deflated Preconditioned Conjugate Gradient Solvers for the Pressure-Poisson Equation: Extensions and Improvements. Int. J. Numer. Meth. Engn. 87, 2-14 (2011).
Pay, M.T. & Baldasano, J.M. DELTA tool experience: CALIOPE forecast evaluation over Spain. 6th FAIRMODE Plenary Meeting , (2013).
Badia, R.M., Hudzia, B., Corrales, M., Dimitrakos, T., K. Djemame,, Elmroth, E., Ferrer, A.J., Forgó, N., Guitart, J., Hernández, F., Kipp, A., Konstanteli, K., Kousiouris, G., Nair, S.K., Sharif, T., Sheridan, C., Sirvent, R., Tordsson, J., Varvarigou, T., Wesner, S., Ziegler, W. & Zsigri, C. Demonstration of the OPTIMIS Toolkit for Cloud Service Provisioning. Lecture Notes on Computer Science (LNCS), Towards a Service-Based Internet, 4th European Conference, ServiceWave 2011 (SW'11) Vol. 6994, 331-333 (2011).
Sirvent, R., Badia, R.M., Bellens, P., Dialinos, V., Labarta, J. & Pérez, J.M. Demostración de uso de GRID superscalar. (2007).
Costa, A., Folch, A. & Macedonio, G. Density-driven transport in the umbrella region of volcanic clouds: Implications for tephra dispersion models. Geophyisical Research Letters 40, 1-5 (2013).
Alonso, J., Torres, J., Silva, L. & Silva, P. Dependable Grid Services: A case Study with OGSA-DAI. (2007).
Alonso, J., Torres, J., Silva, L. & Silva, P. Dependable Grid Services: A case Study with OGSA-DAI. (2007).
Pérez, J.M., Badia, R.M. & Labarta, J. A dependency-aware task-based programming environment for multi-core architectures. (2008).
Soteras, I., Curutchet, C., Bidon-Chanal, A., Dehez,, Angyan, J., Orozco, M., Chipot, C. & Luque, F.J. Derivation of distributed models of atomic polarizability for molecular simulations. (2007).at <http://pubs.acs.org/doi/abs/10.1021/ct7001122>
Badia, R.M., Rodríguez, G. & Labarta, J. Deriving analytical models from a limited number of runs. (2003).
Reyes, S. Desarrollo de un Workflow Generico para el Modelado de Problemas de Barrido Paramétrico en Sistemas Distribuidos . (2012).
Basart, S., Gama, C., Jorba, O., Spada, M., Pérez, C. & Baldasano, J.M. Desert dust and sea-salt evaluation of the NMMB/BSC-CTM model for Capo Verde (North Africa) salt evaluation of the NMMB/BSC-CTM model for Capo Verde (North Africa). 7th International Workshop on Sand/Duststorms and Associated Dustfall. ESA/ESRIN (2013).
Basart, S. Desert dust characterization in Northern Africa, Middle East and Europe through regional dust modelling, and satellite-borne and ground-based observations. (2012).
Basart, S., Baldasano, J.M., Jorba, O. & Pérez, C. Desert dust modelling and forecasting in the Barcelona Supercomputing Center (BSC): developments and activities. XIX Jornades Eduard Fontseré (JEF) 2013 , (2013).
Basart, S., Jorba, O., Terradellas, E., Benincasa, F. & Baldasano, J.M. Desert dust modelling and forecasting in the BSC: Activities and developments. ICAP 5th working group meeting: Recent Progress in Aerosol Observability for Global Modeling , (2013).
Rodero, I., Guim, F., Corbalán, J. & Labarta, J. Design and Implementation of a General-Purpose API of Progress and Performance Indicators. (2007).
Ben-Nun, T., Etsion, Y. & Feitelson, D.G. Design and Implementation of a Generic Resource Sharing Virtual Time Dispatcher. SYSTOR 2010 (2010).
Almasi, G., Archer, C., Castaños, J., Gunnels, J.A., Erway, C.C., Heidelberger, P., Martorell, X., Moreira, J., Pinnow, K., Ratterman, J., Steinmacher-Burow, B.D., Gropp, W. & Bria, Design and Implementation of message-passing services for the Blue Gene/L supercomputer. (2005).

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