Publications

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Author Title Type [ Year(Asc)]
2013
S. Tomić, Akpinar, E., Cristal, A., Ünsal, O. S., and Valero, M., EcoTM: Conflict-Aware Economical Unbounded Hardware Transactional Memory, International Conference on Computational Science, ICCS 2013. Elsevier, www.sciencedirect.com, 2013.
L. M. Bricheno, Soret, A., Wolf, J., Jorba, O., and Baldasano, J. M., Effect of High-Resolution Meteorological Forcing on Nearshore Wave and Current Model Performance, Journal of Atmospheric and Oceanic Technology, vol. 30, no. June. AMER METEOROLOGICAL SOC, UNITED STATES, pp. 1021–1037, 2013.
B. Maric, Abella, J., and Valero, M., Efficient Cache Architectures for Reliable Hybrid Voltage Operation Using EDC Codes, Proceedings of the Conference on Design, Automation and Test in Europe. EDA Consortium, San Jose, CA, USA, pp. 917–920, 2013.
L. Kosmidis, Abella, J., Quiñones, E., and Cazorla, F., Efficient Cache Designs for Probabilistically Analysable Real-time Systems, Computers, IEEE Transactions on, vol. PP. pp. 1-1, 2013.
M. Hanzich, Rubio, F., and Aguilar, G., Efficient Lossy Compression for Seismic Processing, 75th EAGE Conference & Exhibition. pp. Th-16-08, 2013.
V. Puzyrev, de la Puente, J., and Cela, J. M., Efficient parallel solutions to 3D electromagnetic problems using potentials, SEG Technical Program Expanded Abstracts. pp. 663-668, 2013.
A. Emperador, Solernou, A., Sfriso, P., Pons, C., Gelpí, J. L., Fernández-Recio, J., and Orozco, M., Efficient relaxation of protein-protein interfaces by discrete molecular dynamics simulations, Journal of Chemical Theory and Computation, vol. 9, no. 2. pp. 1222–1229, 2013.
X. Rubio-Campillo, El pasado en tu sofá: juegos de simulación histórica en entornos computacionales portables, Her&Mus, vol. V, no. 2. pp. 55-62, 2013.
J. de la Puente, Ferrer, M., Castillo, J. E., Gutierrez, N., and Cela, J. M., Elastic Mimetic Finite-differences in the Presence of Topography, 75th EAGE Conference & Exhibition. pp. Tu-01-09, 2013.
S. Saen-oon, Lucas, M. F., and Guallar, V., Electron transfer in proteins: theory, applications and future perspectives., Physical chemistry chemical physics : PCCP, vol. 15, no. 37. pp. 15271-85, 2013.
J. L. Berral, Gavaldà, R., and Torres, J., Empowering Automatic Data-center Management with Machine Learning, The 28th ACM Symposium on Applied Computing. ACM, Coimbra, Portugal, pp. 170–172, 2013.
X. Sáez, Casoni, E., Houzeaux, G., Vázquez, M., and Jerusalem, A., Enabling a Computational Mechanics Code for Massively Parallel Supercomputers, Proceedings of the Third International Conference on Parallel, Distributed, Grid and Cloud Computing for Engineering (PARENG). Civil-Comp Press, Stirlingshire, UK, p. Paper 13, 2013.
J. Polo, Becerra, Y., Carrera, D., Torres, J., Ayguadé, E., Spreitzer, M., and Steinder, M., Enabling Distributed Key-Value Stores with Low Latency-Impact Snapshot Support, 12th IEEE International Symposium on Network Computing and Applications. Cambridge (MA), United States, pp. 65–72, 2013.
Y. Cai, Yalcin, G., Mutlu, O., Haratsch, E., Cristal, A., Unsal, O., and Mai, K., Error Analysis and Retention-Aware Error Management for NAND Flash Memory, Intel Technology Journal, vol. 17. pp. 140–164, 2013.
A. Soret, Jiménez-Guerrero, P., Andres, D., Cardenas, F., Rueda, S., and Baldasano, J. M., Estimation of future emission scenarios for analysing the impact of traffic mobility on a large Mediterranean conurbation in the Barcelona Metropolitan Area (Spain), Atmospheric Pollution Research, vol. 4, no. 1. Turkish National Committee for Air Pollution Research and Control (TUNCAP), TURKY, pp. 22-32, 2013.
I. F. Pló, Estudio teórico de formas inusuales y modificadas de los ácidos nucleicos, 2013.
R. Amaral, Badia, R. M., Blanquer, I., Candela, L., Castelli, D., Giovanni, R. D., Gray, W. A., Lezzi, D., Pagano, P., Perez-Canhos, V., Rafanell, R., Rebello, V., and Torres, E., EU-Brazil Open Data and Cloud Computing e-Infrastructure for Biodiversity, 5th International Workshop on Science Gateways. CEUR, Zurich, Switzerland, 2013.
V. Subotic, Evaluating techniques for parallelization tuning in MPI, OmpSs and MPI/OmpSs, Universitat Politecnica de Catalunya (UPC), 2013.
M. T. Pay, Arévalo, G., and Baldasano, J. M., Evaluating the impact of increasing horizontal resolution on AIR QUALIY MODELLING SYSTEMS over big metropolitan areas in Spain, 12th Annual CMAS Conference, vol. . CMAS, 28-30 October, 2013. Chapel Hill, NC (USA), 2013.
M. Hanzich, Aguilar, G., and Rubio, F., Evaluating Xeon Phi Coprocessor Through Acoustic RTM, 75th EAGE Conference & Exhibition. pp. Tu-P10-12, 2013.
E. Terradellas, Baldasano, J. M., Cuevas, E., Basart, S., Huneeus, N., Camino, C., Dundar, C., and Benincasa, F., Evaluation of atmospheric dust prediction models using ground-based observations, European Geosciences Union (EGU) General Assembly 2013. Geophysical Research Abstracts, vol. 15, no. EGU2013-8274. European Geosciences Union (EGU), 07-12 April, 2013. Viena, Austria, 2013.
J. M. Baldasano, Pay, M. T., Arévalo, G., and Gassó, S., Evaluation of Chemical Initial and Boundary on Ozone Concentrations in the Spanish CALIOPE AQFS, 5th International Workshop on Air Quality Forecasting Research (IWAQFR), vol. . WMO, October 8-9, 2013. Santiago, Chile, 2013.
I. Aguilera, Basagaña, X., Pay, M. T., Agis, D., Bouso, L., Foraster, M., Rivera, M., Baldasano, J. M., and Künzli, N., Evaluation of the CALIOPE air quality forecasting system for epidemiological research: the example of NO2 in the province of Girona, Spain, 2013 conference Environment and Health—Bridging South, North, East and West. Conference of ISEE, ISES and ISIAQ, vol. . International Society of Environmental Epidemiology (ISEE), the International Society of Exposure Science (ISES), and the International Society of Indoor Air Quality and Climate (ISIAQ), 19-23 August, 2013. Basel, Switzerland, 2013.
I. Aguilera, Basagaña, X., Pay, M. T., Agis, D., Bouso, L., Foraster, M., Rivera, M., Baldasano, J. M., and Künzli, N., Evaluation of the CALIOPE air quality forecasting system for epidemiological research: The example of NO2 in the province of Girona (Spain), Atmospheric Environment, vol. 72. PERGAMON-ELSEVIER SCIENCE LTD, ENGLAND, pp. 134 - 141, 2013.
J. M. Baldasano, Pay, M. T., Arévalo, G., and Gassó, S., Evaluation the CALIOPE Air Quality Forecast System for Year 2011, 4th International Meeting on Meteorology and Climatology of the Mediterranean (4th IMMCM), vol. . Network of Meteorology of the Mediterranean and Associació Catalan de Meteorologia, February 27 - March 1, 2013. Banyuls (Roussillon), France, 2013.
V. Reyes-García, Guèze, M., Luz, A. C., Paneque-Galvez, J., Macía, M. J., Orta-Martinez, M., Pino, J., and Rubio-Campillo, X., Evidence of traditional knowledge loss among a contemporary indigenous society, Evolution & Human Behavior, vol. 34, no. 4. pp. 249-257, 2013.
M. Orozco, “Expanding the frontiers of molecular dynamics simulations of DNA”. CECAM Conference. University of Vienna. 2013.
C. Pallara, Jiménez-García, B., Pérez-Cano, L., Romero-Durana, M., Solernou, A., Grosdidier, S., Pons, C., Moal, I. H., and Fernández-Recio, J., Expanding the frontiers of protein-protein modeling: from docking and scoring to binding affinity predictions and other challenges., Proteins, vol. 81, no. 12. pp. 2192-200, 2013.
N. Rajovic, Rico, A., Vipond, J., Gelado, I., Puzovic, N., and Ramirez, A., Experiences With Mobile Processors for Energy Efficient HPC, ACM/IEEE Design, Automation, and Test in Europe (DATE). ACM, IEEE, Grenoble, France, pp. 464–468, 2013.
P. Sfriso, Hospital, A., Emperador, A., and Orozco, M., Exploration of conformational transition pathways from coarse-grained simulations., Bioinformatics (Oxford, England), vol. 29, no. 16. pp. 1980-6, 2013.
M. Candotti, Pérez, A., Ferrer-Costa, C., Rueda, M., Meyer, T., Gelpí, J. L., and Orozco, M., Exploring early stages of the chemical unfolding of proteins at the proteome scale., PLoS Comput Biol, vol. 9, no. 12. p. e1003393, 2013.
M. Candotti, Pérez, A., Ferrer-Costa, C., Rueda, M., Meyer, T., Gelpí, J. L., and Orozco, M., Exploring early stages of the chemical unfolding of proteins at the proteome scale., PLoS computational biology, vol. 9, no. 12. p. e1003393, 2013.
J. R. Lopez-Blanco, Reyes, R., Aliaga, J. I., Badia, R. M., Pablo, C., and Quintana-Ortí, E. S., Exploring large macromolecular functional motions on clusters of multicore processors, Journal of Computational Physics, vol. 246. pp. 275–288, 2013.
M. Orozco, “Exploring protein flexibility”. Plenary Lecture. Cambridge University. 2013.
E. Naboni, Zhang, Y., Maccarini, A., Hirsch, E., and Lezzi, D., Extending the use of parametric simulation in practice through a cloud based online service, 1st IBPSA-Italy Conference: BSA2013 Building Simulation Applications Conference. Bolzano University Press, Bolzano, Italy, pp. 105–112, 2013.
J. Strassburg and Alexandrov, V., Facilitating Analysis of Monte Carlo Dense Matrix Inversion Algorithm Scaling Behaviour through Simulation, Journal of Computational Science. Elsevier, 2013.
C. Luque, Moreto, M., Cazorla, F. J., and Valero, M., Fair CPU Time Accounting in CMP+SMT Processors, ACM Trans. Archit. Code Optim., vol. 9. ACM, New York, NY, USA, pp. 50:1–50:25, 2013.
G. Yalcin, Unsal, O., and Cristal, A., Fault Tolerance for Multi-Threaded Applications by Leveraging Hardware Transactional Memory, 10th conference on ACM Computing Frontiers. Ischia, Italy, pp. 4–4, 2013.
G. Yalcin, Unsal, O., and Cristal, A., FaulTM: Error Detection and Recovery Using Hardware Transactional Memory, ACM/IEEE Design, Automation, and Test in Europe (DATE). ACM, IEEE, Grenoble, France, 2013.
Y. Miki, Pogni, R., Acebes, S., Lucas, F., Fernández-Fueyo, E., Baratto, M. C., Fernández, M. I., de Los Ríos, V., Ruiz-Dueñas, F. J., Sinicropi, A., Basosi, R., Hammel, K. E., Guallar, V., and Martínez, A. T., Formation of a tyrosine adduct involved in lignin degradation by Trametopsis cervina lignin peroxidase: a novel peroxidase activation mechanism., The Biochemical journal, vol. 452, no. 3. pp. 575-84, 2013.
F. Y. Ahmadabadi, Jiménez, D., Álvarez, C., Etsion, Y., and Badia, R. M., FPGA-Based Prototype of the Task Superscalar Architecture, WRC 2013 : 7th HiPEAC Workshop on Reconfigurable Computing. Belin, Germany, pp. 1–10, 2013.
H. Servat, Llort, G., Huck, K., Giménez, J., and Labarta, J., Framework for a Productive Performance Optimization, Parallel Computing Systems and Applications, vol. 39, no. 8. Elsevier, pp. 336-353, 2013.
M. Terrazas, Alagia, A., Faustino, I., Orozco, M., and Eritja, R., Functionalization of the 3'-ends of DNA and RNA strands with N-ethyl-N-coupled nucleosides: a promising approach to avoid 3'-exonuclease-catalyzed hydrolysis of therapeutic oligonucleotides., Chembiochem : a European journal of chemical biology, vol. 14, no. 4. pp. 510-20, 2013.
M. - C. Marinescu and Sánchez, C., Fusing statecharts and java, ACM Trans. Embed. Comput. Syst., vol. 12. ACM, New York, NY, USA, pp. 45:1–45:21, 2013.
M. King, Khan, A., Agarwal, A., Arcas, O., and Arvind, Generating Infrastructure for FPGA-Accelerated Applications, 23rd International Conference on Field Programmable Logic and Applications. IEEE, Porto, Portugal, pp. 1–6, 2013.
A. Julià, Domènech, E., Ricart, E., Tortosa, R., García-Sánchez, V., Gisbert, J. P., Nos Mateu, P., Gutiérrez, A., Gomollón, F., Mendoza, J. L., García-Planella, E., Barreiro-de Acosta, M., Muñoz, F., Vera, M., Saro, C., Esteve, M., Andreu, M., Alonso, A., López-Lasanta, M., Codó, L., Gelpí, J. L., García-Montero, A. C., Bertranpetit, J., Absher, D., Panés, J., and Marsal, S., A genome-wide association study on a southern European population identifies a new Crohn's disease susceptibility locus at RBX1-EP300., Gut. 2013.
J. de la Puente, Ferrer, M., and Cela, J. M., Geological Complexity, Topography and Seismic Wave Modelling: Are Finite-Differences Up to the Challenge?, SIAM Conference on Mathematical and Computational Issues in the Geosciences, Padova, Italy. 2013.
C. Scaini, Bolic, T., Castelli, L., and Folch, A., A GIS-based tool for the estimation of impacts of volcanic ash dispersal on European air traffic, Proceedings of the 3rd SESAR Innovation Days. 2013.
B. Eguzkitza and Houzeaux, G., A Gluing Method for Non-Matching Meshes, vol. 110. Elsevier, Computers and Fluids, pp. 159-168, 2013.
S. Abadal, Alarcon, E., Lemme, M. C., Nemirovsky, M., and Cabellos-Aparicio, A., Graphene-enabled Wireless Communication for Massive Multicore Architectures, IEEE Communications Magazine . 2013.

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