Publications

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Author Title Type [ Year(Asc)]
2013
J. M. Baldasano, Pay, M. T., Arévalo, G., and Gassó, S., Evaluation the CALIOPE Air Quality Forecast System for Year 2011, 4th International Meeting on Meteorology and Climatology of the Mediterranean (4th IMMCM), vol. . Network of Meteorology of the Mediterranean and Associació Catalan de Meteorologia, February 27 - March 1, 2013. Banyuls (Roussillon), France, 2013.
V. Reyes-García, Guèze, M., Luz, A. C., Paneque-Galvez, J., Macía, M. J., Orta-Martinez, M., Pino, J., and Rubio-Campillo, X., Evidence of traditional knowledge loss among a contemporary indigenous society, Evolution & Human Behavior, vol. 34, no. 4. pp. 249-257, 2013.
M. Orozco, “Expanding the frontiers of molecular dynamics simulations of DNA”. CECAM Conference. University of Vienna. 2013.
C. Pallara, Jiménez-García, B., Pérez-Cano, L., Romero-Durana, M., Solernou, A., Grosdidier, S., Pons, C., Moal, I. H., and Fernández-Recio, J., Expanding the frontiers of protein-protein modeling: from docking and scoring to binding affinity predictions and other challenges., Proteins, vol. 81, no. 12. pp. 2192-200, 2013.
N. Rajovic, Rico, A., Vipond, J., Gelado, I., Puzovic, N., and Ramirez, A., Experiences With Mobile Processors for Energy Efficient HPC, ACM/IEEE Design, Automation, and Test in Europe (DATE). ACM, IEEE, Grenoble, France, pp. 464–468, 2013.
P. Sfriso, Hospital, A., Emperador, A., and Orozco, M., Exploration of conformational transition pathways from coarse-grained simulations., Bioinformatics (Oxford, England), vol. 29, no. 16. pp. 1980-6, 2013.
M. Candotti, Pérez, A., Ferrer-Costa, C., Rueda, M., Meyer, T., Gelpí, J. L., and Orozco, M., Exploring early stages of the chemical unfolding of proteins at the proteome scale., PLoS Comput Biol, vol. 9, no. 12. p. e1003393, 2013.
M. Candotti, Pérez, A., Ferrer-Costa, C., Rueda, M., Meyer, T., Gelpí, J. L., and Orozco, M., Exploring early stages of the chemical unfolding of proteins at the proteome scale., PLoS computational biology, vol. 9, no. 12. p. e1003393, 2013.
J. R. Lopez-Blanco, Reyes, R., Aliaga, J. I., Badia, R. M., Pablo, C., and Quintana-Ortí, E. S., Exploring large macromolecular functional motions on clusters of multicore processors, Journal of Computational Physics, vol. 246. pp. 275–288, 2013.
M. Orozco, “Exploring protein flexibility”. Plenary Lecture. Cambridge University. 2013.
E. Naboni, Zhang, Y., Maccarini, A., Hirsch, E., and Lezzi, D., Extending the use of parametric simulation in practice through a cloud based online service, 1st IBPSA-Italy Conference: BSA2013 Building Simulation Applications Conference. Bolzano University Press, Bolzano, Italy, pp. 105–112, 2013.
J. Strassburg and Alexandrov, V., Facilitating Analysis of Monte Carlo Dense Matrix Inversion Algorithm Scaling Behaviour through Simulation, Journal of Computational Science. Elsevier, 2013.
C. Luque, Moreto, M., Cazorla, F. J., and Valero, M., Fair CPU Time Accounting in CMP+SMT Processors, ACM Trans. Archit. Code Optim., vol. 9. ACM, New York, NY, USA, pp. 50:1–50:25, 2013.
G. Yalcin, Unsal, O., and Cristal, A., Fault Tolerance for Multi-Threaded Applications by Leveraging Hardware Transactional Memory, 10th conference on ACM Computing Frontiers. Ischia, Italy, pp. 4–4, 2013.
G. Yalcin, Unsal, O., and Cristal, A., FaulTM: Error Detection and Recovery Using Hardware Transactional Memory, ACM/IEEE Design, Automation, and Test in Europe (DATE). ACM, IEEE, Grenoble, France, 2013.
Y. Miki, Pogni, R., Acebes, S., Lucas, F., Fernández-Fueyo, E., Baratto, M. C., Fernández, M. I., de Los Ríos, V., Ruiz-Dueñas, F. J., Sinicropi, A., Basosi, R., Hammel, K. E., Guallar, V., and Martínez, A. T., Formation of a tyrosine adduct involved in lignin degradation by Trametopsis cervina lignin peroxidase: a novel peroxidase activation mechanism., The Biochemical journal, vol. 452, no. 3. pp. 575-84, 2013.
F. Y. Ahmadabadi, Jiménez, D., Álvarez, C., Etsion, Y., and Badia, R. M., FPGA-Based Prototype of the Task Superscalar Architecture, WRC 2013 : 7th HiPEAC Workshop on Reconfigurable Computing. Belin, Germany, pp. 1–10, 2013.
H. Servat, Llort, G., Huck, K., Giménez, J., and Labarta, J., Framework for a Productive Performance Optimization, Parallel Computing Systems and Applications, vol. 39, no. 8. Elsevier, pp. 336-353, 2013.
M. Terrazas, Alagia, A., Faustino, I., Orozco, M., and Eritja, R., Functionalization of the 3'-ends of DNA and RNA strands with N-ethyl-N-coupled nucleosides: a promising approach to avoid 3'-exonuclease-catalyzed hydrolysis of therapeutic oligonucleotides., Chembiochem : a European journal of chemical biology, vol. 14, no. 4. pp. 510-20, 2013.
M. - C. Marinescu and Sánchez, C., Fusing statecharts and java, ACM Trans. Embed. Comput. Syst., vol. 12. ACM, New York, NY, USA, pp. 45:1–45:21, 2013.
M. King, Khan, A., Agarwal, A., Arcas, O., and Arvind, Generating Infrastructure for FPGA-Accelerated Applications, 23rd International Conference on Field Programmable Logic and Applications. IEEE, Porto, Portugal, pp. 1–6, 2013.
A. Julià, Domènech, E., Ricart, E., Tortosa, R., García-Sánchez, V., Gisbert, J. P., Nos Mateu, P., Gutiérrez, A., Gomollón, F., Mendoza, J. L., García-Planella, E., Barreiro-de Acosta, M., Muñoz, F., Vera, M., Saro, C., Esteve, M., Andreu, M., Alonso, A., López-Lasanta, M., Codó, L., Gelpí, J. L., García-Montero, A. C., Bertranpetit, J., Absher, D., Panés, J., and Marsal, S., A genome-wide association study on a southern European population identifies a new Crohn's disease susceptibility locus at RBX1-EP300., Gut. 2013.
J. de la Puente, Ferrer, M., and Cela, J. M., Geological Complexity, Topography and Seismic Wave Modelling: Are Finite-Differences Up to the Challenge?, SIAM Conference on Mathematical and Computational Issues in the Geosciences, Padova, Italy. 2013.
C. Scaini, Bolic, T., Castelli, L., and Folch, A., A GIS-based tool for the estimation of impacts of volcanic ash dispersal on European air traffic, Proceedings of the 3rd SESAR Innovation Days. 2013.
B. Eguzkitza and Houzeaux, G., A Gluing Method for Non-Matching Meshes, vol. 110. Elsevier, Computers and Fluids, pp. 159-168, 2013.
S. Abadal, Alarcon, E., Lemme, M. C., Nemirovsky, M., and Cabellos-Aparicio, A., Graphene-enabled Wireless Communication for Massive Multicore Architectures, IEEE Communications Magazine . 2013.
M. Paolieri, Mische, J., Metzlaff, S., Gerdes, M., Quiñones, E., Uhrig, S., Ungerer, T., and Cazorla, F. J., A Hard Real-time Capable Multi-core SMT Processor, ACM Trans. Embed. Comput. Syst., vol. 12. ACM, New York, NY, USA, pp. 79:1–79:26, 2013.
H. Cook, Moreto, M., Bird, S., Dao, K., Patterson, D. A., and Asanovic, K., A hardware evaluation of cache partitioning to improve utilization and energy-efficiency while preserving responsiveness, Proceedings of the 40th Annual International Symposium on Computer Architecture. ACM, New York, NY, USA, pp. 308–319, 2013.
Q. Liu, Moreto, M., Jiménez, V., Abella, J., Cazorla, F. J., and Valero, M., Hardware Support for Accurate Per-task Energy Metering in Multicore Systems, ACM Trans. Archit. Code Optim., vol. 10. ACM, New York, NY, USA, pp. 34:1–34:27, 2013.
L. Alvarez, Vilanova, L., Gonzalez, M., Martorell, X., Navarro, N., and Ayguadé, E., Hardware-Software Coherence Protocol for the Coexistence of Caches and Local Memories, IEEE Transactions on Computers, vol. 99. IEEE Computer Society, Los Alamitos, CA, USA, p. 1, 2013.
A. Armejach, Negi, A., Cristal, A., Unsal, O., Stenström, P., and Harris, T., HARP: Adaptive Abort Recurrence Prediction for Hardware Transactional Memory, IEEE Conference on High Performance Computing (HiPC 2013). IEEE press, Bengaluru, India, 2013.
A. Filgueras, Gil, E., Alvarez, C., Jiménez-González, D., Martorell, X., Langer, J., and Noguera, J., Heterog eneous tasking on SMP/FPGA SoCs: the case of OmpSs and the Zynq, workshop @VLSI-SOC: W1A (Special Session 2): Are processors the NAND gats of the future?. IFIP/IEEE, 2013.
A. Filgueras, Gil, E., Álvarez, C., Jiménez, D., Martorell, X., Langer, J., and Noguera, J., Heterogeneous tasking on SMP/FPGA SoCs: the case of OmpSs and the Zynq, 21st IFIP/IEEE International Conference on Very Large Scale Integration (VLSI-SoC). IEEE, Istambul, Turkey, pp. 290–291, 2013.
T. Loridan, Lindberg, F., Jorba, O., Kotthaus, S., Grossman-Clarke, S., and Grimmond, C. S. B., High Resolution Simulation of the Variability of Surface Energy Balance Fluxes Across Central London with Urban Zones for Energy Partitioning, Boundary-Layer Meteorology, vol. , no. March. Springer Netherlands, NETHERLANDS, pp. 1-31, 2013.
J. de la Puente, Castillo, J. E., and Cela, J. M., High-Order Mimetic Modelling of 3D Surface Waves, SIAM Annual Meeting, San Diego, USA. 2013.
A. Hospital and Gelpi, J. L., High‐throughput molecular dynamics simulations: toward a dynamic view of macromolecular structure, Wiley Interdisciplinary Reviews: Computational Molecular Science. John Wiley & Sons, Inc., 2013.
J. M. Baldasano, HPC in Environmental Issues, H2020: Challenges and opportunities for HPC, RISC Workshop, vol. . RISC, 25 November, 2013. México D.F. (México), 2013.
R. Arís, Vázquez, M., Aguado-Sierra, J., Rivero, M., and Houzeaux, G., HPC techniques in Cardiac Modeling. 2013.
F. Yazdanpanah, Alvarez-Martinez, C., Jiménez-González, D., and Etsion, Y., Hybrid Dataflow/Von-Neumann Architectures, IEEE Transactions on Parallel and Distributed Systems, vol. 99. IEEE Computer Society, Los Alamitos, CA, USA, p. 1, 2013.
V. Alexandrov and Strassburg, J., Hybrid Scalable Monte Carlo Methods for Approximate Matrix Inversion, "Hybrid Scalable Monte Carlo Methods for Approximate Matrix Inversion" submitted to 9th IMACS Seminar on Monte Carlo Methods 2013. 2013.
V. Subotic, Sancho, J. C., Labarta, J., and Valero, M., Identifying Critical Code Sections in Dataflow Programming Models, Parallel, Distributed and Network-Based Processing (PDP), 2013 21st Euromicro International Conference on. pp. 29-37, 2013.
M. Ritter, Müller, M. D., Jorba, O., Parlow, E., and Liu, L. - J. S., Impact of chemical and meteorological boundary and initial conditions on air quality modeling: WRF-Chem sensitivity evaluation for a European domain, Meteorology and Atmospheric Physics, vol. 119, no. 1-2. SPRINGER WIEN, AUSTRIA, pp. 59-70, 2013.
L. Menut, Pérez, C., Haustein, K., Bessagnet, B., Prigent, C., and Alfaro, S., Impact of surface roughness and soil texture on mineral dust emission fluxes modeling, Journal of Geophysical Research: Atmospheres, vol. 118, no. 12. AMER GEOPHYSICAL UNION, UNITED STATES, pp. 6505–6520, 2013.
A. Cresti, Louvet, T., Ortmann, F., Van Tuan, D., Lenarczyk, P., Huhs, G., and Roche, S., Impact of Vacancies on Diffusive and Pseudodiffusive Electronic Transport in Graphene, Crystals, vol. 3. pp. 289–305, 2013.
J. Bueno-Hedo, Badia, R. M., Martorell, X., Ayguadé, E., and Labarta, J., Implementing OmpSs Support for Regions of Data in Architectures with Multiple Address Spaces, 27th International Conference on Supercomputing (ICS). ACM, Eugene, OR, United States, pp. 359–368, 2013.
Y. Sazeides, Ozer, E., Kershaw, D., Nikolaou, P., Kleanthous, M., and Abella, J., Implicit-Storing and Redundant-Encoding-of-Attribute Information in Error-Correction-Codes, 46th IEEE/ACM International Symposium on Microarchitecture (MICRO). ACM, Davis (California), United States, pp. 160–171, 2013.
S. Sciabola, Cao, Q., Orozco, M., Faustino, I., and Stanton, R. V., Improved nucleic acid descriptors for siRNA efficacy prediction., Nucleic acids research, vol. 41, no. 3. pp. 1383-94, 2013.
M. Guevara, Martínez, F., Arévalo, G., Gassó, S., and Baldasano, J. M., An improved system for modelling Spanish emissions: HERMESv2.0, Atmospheric Environment, vol. 81. PERGAMON-ELSEVIER SCIENCE LTD, ENGLAND, pp. 209 - 221, 2013.
M. Alvanos, Farreras, M., Tiotto, E., Amaral, J. N., and Martorell, X., Improving Communication in PGAS Environments: Static and Dynamic Coalescing in UPC, 27th International Conference on Supercomputing (ICS). ACM, Eugene, OR, United States, pp. 129–138, 2013.
M. Alvanos, Gabriel, T., Farreras, M., Tiotto, E., Amaral, J. N., and Martorell, X., Improving Performance of All-to-all Communication Through Loop Scheduling in PGAS Environments, 27th International Conference on Supercomputing (ICS). ACM, Eugene, OR, United States, pp. 457–458, 2013.

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