Publications

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A
C. González, Ishikawa, H., Hayashi, A., Jiménez, D., Álvarez, C., Kimura, K., and Kasahara, H., Automatic Design Exploration Framework for Multicores with Reconfigurable Accelerators, WRC 2013 : 7th HiPEAC Workshop on Reconfigurable Computing. Berlin, Germany, pp. 1–10, 2013.
N. Poggi, Berral, J. L., Moreno, T., Gavaldà, R., and Torres, J., Automatic Detection and Banning of Content Stealing Bots for E-commerce. NIPS 2007 Workshop on Machine Learning in Adversarial Environments for Computer Security. December 8, 2007. British Columbia, Canada, 2007.
J. González, Giménez, J., and Labarta, J., Automatic Detection of Parallel Applications Computation Phases, IPDPS '09: Proceedings of the 23rd IEEE International Parallel and Distributed Processing Symposium. Rome, Italy, 2009.
L. Hascoet, Vázquez, M., and Dervieux, A., Automatic Differentiation for Optimum Design, applied to Sonic Boom reduction. Montreal (Canada)., 2003.
J. González, Giménez, J., and Labarta, J., Automatic evaluation of the computation structure of parallel applications, PDCAT'09: Proceedings of the 10th International Conference on Parallel and Distributed Computing, Applications and Technologies. 2009.
J. Cabezas, Vilanova, L., Gelado, I., Jablin, T. B., Navarro, N., and Hwu, W. -meiW., Automatic execution of single-GPU computations across multiple GPUs, in 23rd International Conference on Parallel Architectures and Compilation Techniques (PACT 2014), Edmonton, AB, Canada, 2014, pp. 467–468.
V. Subotic, Ayguadé, E., Labarta, J., and Valero, M., Automatic Exploration of Potential Parallelism in Sequential Applications, in 29th International Supercomputing Conference, ISC 2014, Leipzig, Germany, 2014, pp. 156–171.
C. González, Fernández, M., Jiménez, D., Álvarez, C., and Martorell, X., Automatic Generation and Testing of Application Specific Hardware Accelerators on a New Reconfigurable OpenSPARC Platform, 5th HiPEAC Workshop on Reconfigurable Computing (WRC 2011). pp. 85-94, 2011.
C. González, Fernández, M., Jiménez, D., Álvarez, C., and Martorell, X., Automatic generation of application-specific hardware accelerators on OpenSPARC, International Symposium on Code Generation and Optimization (CGO 2011). 2011.
R. Sirvent, Pérez, J. M., Badia, R. M., and Labarta, J., Automatic Grid workflow based on imperative programming languages, vol. 18 , no. 10. Concurrency and Computation: Practice and experience, pp. 1169-1186, 2006.
R. Nou, Giralt, J., and Cortes, T., Automatic I/O scheduler selection through online workload analysis, The 9th IEEE International Conference on Autonomic and Trusted Computing (ATC 2012). Fukuoka (Japan), 2012.
M. Casas, Badia, R. M., and Labarta, J., Automatic Phase Detection and Structure Extraction of MPI Applications. International Journal of High Performance Computing Applications, Vol. 24, Number 3, pp. 335-360, 2010.
M. Casas, Badia, R. M., and Labarta, J., Automatic Phase Detection of MPI Applications. proceedings of ParCo 2007, 2007.
N. Vujic, González, M., Martorell, X., and Ayguadé, E., Automatic Prefetch and Modulo Scheduling Transformations for the Cell BE Architecture. IEEE Transactions on Parallel and Distributed Systems, vol 21(4), pp.494-505, 2010.
N. Vujic, González, M., Martorell, X., and Ayguadé, E., Automatic Pre-Fetch and Modulo Scheduling Transformations for the Cell BE Architecture. Proceedings of the 21st Annual Workshop Languages and Compilers for Parallel Computing (LCPC'08), 2008.
A. Folch, Cavazzoni, C., Costa, A., and Macedonio, G., An automatic procedure to forecast tephra fallout, Journal of Volcanology and Geothermal Research, vol. 177, no. 4. ELSEVIER SCIENCE BV, NETHERLANDS, pp. 767-777, 2008.
J. González, Huck, K., Giménez, J., and Labarta, J., Automatic Refinement of Parallel Applications Structure Detection, LSPP '12: Proceedings of the 2012 Workshop on Large-Scale Parallel Processing. Shanghai, China, 2012.
M. Casas, Badia, R. M., and Labarta, J., Automatic Structure Extraction of MPI Applications Tracefiles, Euro-Par Conference. Europar 2007, 2007.
A. Duran, González, M., Corbalán, J., Martorell, X., Ayguadé, E., Labarta, J., and Silvera, R., Automatic Thread Distribution for Nested Parallelism in OpenMP. 19th ACM International Conference on Supercomputing, 2005.
B. Varghese, McKee, G., and Alexandrov, V., Automating Fault Tolerance in High-Performance Computational Jobs using Multi-Agent Approaches, Computers in Biology and Medicine, vol. 48 (2014) . pp. pp. 28–41 , 2014.
A. Sánchez, Montes, J., Pérez, M. S., and Cortes, T., An Autonomic Framework for Enhancing the Quality of Data Grid Services, Future Generation Computer Systems, vol. 28, no. 7. Elsevier, p. 1005--1016, 2012.
D. Carrera, Steinder, M., Whalley, I., Torres, J., and Ayguadé, E., Autonomic Placement of Mixed Batch and Transactional Workloads, IEEE Transactions on Parallel and Distributed Systems, vol. 23. IEEE Computer Society, Los Alamitos, CA, USA, pp. 219-231, 2012.
R. Nou, Kounev, S., and Torres, J., Autonomic QoS control in enterprise Grid environments using online simulation. Journal of Systems and Software . ISSN: 0164-1212. 2008. (83)., 2008.
S. Kounev, Nou, R., and Torres, J., Autonomic QoS-Aware Resource Management in Grid Computing using Online Performance Models. 2nd International Conference on Performance Evaluation Methodologies and Tools (VALUETOOLS 2007), 2007.
T. Cortes, Autonomic Storage System based on Automatic Learning. Microsoft Research, Cambridge, UK, 2008.
F. Hidrobo and Cortes, T., Autonomic Storage System Based on Automatic Learning. International Conference on High-performance Computing (HiPC 2004), 2004.
S. Royuela, Duran, A., Chunhua, L., and Quinlan, D. J., Auto-scoping for OpenMP tasks, International Workshop on OpenMP. 2012.
A. Rico, Ramirez, A., and Valero, M., Available task-level parallelism on the Cell BE, Scientific Programming, vol. 17, no. 1-2. pp. 59-76, 2009.
T. Cortes, Girona, S., and Labarta, J., Avoiding the Cache-coherence Problem in Parallel/Distribute File Systems. High Performance Computing and Networking (HPCN´97), 1997.
B
N. Martin-Pintado, Deleavey, G. F., Portella, G., Campos-Olivas, R., Orozco, M., Damha, M. J., and González, C., Backbone FCH⋅⋅⋅O Hydrogen Bonds in 2'F-Substituted Nucleic Acids., Angewandte Chemie (International ed. in English). 2013.
C. Boneti, Cazorla, F., Gioiosa, R., Corbalán, J., Labarta, J., and Valero, M., Balancing HPC Applications Through Smart Allocation of Resources in MT Processors. Miami, Florida, USA, 2008.
J. M. Baldasano and Soret, A., Balanços de carboni-Emissions. Grup d'Experts sobre Canvi Climàtic de Catalunya, Monestir de les Avellanes, Lleida, 2010.
M. Pericàs, González, R., Cristal, A., Veidenbaum, A., and Valero, M., Banked Front-End Register File. Computer Architecture Department, Universitat Politècnica de Catalunya (UPC), 2004.
A. Duran, Teruel, X., Ferrer, R., Martorell, X., and Ayguadé, E., Barcelona OpenMP Tasks Suite: A Set of Benchmarks Targeting the Exploitation of Task Parallelism in OpenMP. Proc. of the 2009 International Conference on Parallel Processing (ICPP 2009), 2009.
D. Linde, Ruiz-Dueñas, F. J., Fernández-Fueyo, E., Guallar, V., Hammel, K. E., Pogni, R., and Martínez, A. T., Basidiomycete DyPs: Genomic diversity, structural–functional aspects, reaction mechanism and environmental significance, Archives of Biochemistry and Biophysics. p. -, 2015.
D. Linde, Ruiz-Dueñas, F. J., Fernández-Fueyo, E., Guallar, V., Hammel, K. E., Pogni, R., and Martínez, A. T., Basidiomycete DyPs: Genomic diversity, structural–functional aspects, reaction mechanism and environmental significance, Archives of Biochemistry and Biophysics. p. -, 2015.
E. Fernández, Torrents, D., Chillarón, J., Del Rio, M., Zorzano, A., and Palacín, M., Basolateral LAT-2 has a major role in the transepithelial flux of L-cystine in the renal proximal tubule cell line OK.. J Am Soc Nephrol., 2003.
Y. Becerra, Carrera, D., and Ayguadé, E., Batch job profiling and adaptive profile enforcement for virtualized environments. 17th Euromicro International Conference on Parallel, Distributed, and Network-Based Processing (PDP2009), 2009.
J. M. Baldasano, Behaviour of Baling-Wrapping MSW Landfill. Application in Spain, Landfill 2011: Waste Management Facilities. The New Order. Institute of Waste Management of Southern Africa, 18-20 October. Durban, South Africa, 2011.
F. Ortigosa, Zhou, H., Fernandez, S., Hanzich, M., Araya-Polo, M., Rubio, F., de la Cruz, R., and Cela, J. M., Benchmarking 3D RTM on HPC Platforms, VII Congreso de Exploración y Desarrollo de Hidrocarburos. Instituto Argentino del Petroleo y del Gas, 2008.
O. Huertas, Blas, J. R., Soteras, I., Orozco, M., and Luque, F. J., Benzoderivatives of nucleic acid bases as modified DNA building blocks. J.Phys.Chem.A, 2006.
A. Falcón, Stark, J., Ramirez, A., Lai, K., and Valero, M., Better branch prediction through prophet/critic hybrids, IEEE Micro, vol. 25, no. 1. pp. 80-89, 2005.
E. Artiaga, Cortes, T., and Martí, J., Better Cloud Storage Usability Through Name Space Virtualization, 6th IEEE/ACM Utility and Cloud computing conference. IEEE Computer Society, Dresden, Germany, 2013.
O. Ferrer-Roca, Tous, R., and Milito, R., Big and Small data. The FOG, in 1st International Conference on Identification, Information and Knowledge in the Internet of the Things, Beijing, China, 2014.
J. A. Ortega, Blas, J. R., Orozco, M., Grandas, A., Pedroso, E., and Robles, J., Binding affinities of oligonucleotides and PNAs containing phenoxazine and G-clamp cytosine analogs are unusually sequence-dependent. Organic Letters, 9, 4503-4506, 2007.
D. Lecina, Binding free energy and ligand orientation calculations using Monte Carlo method with Markov State analysis, Entropy in Biomolecular Systems Workshop. Vienna, Austria . 2014.
V. Guallar and Borrelli, K., A binding mechanism in protein-nucleotide interactions: implication for U1A RNA binding., Proceedings of the National Academy of Sciences of the United States of America, vol. 102, no. 11. pp. 3954-9, 2005.
P. Lafortune, Boulanger, H., Aubin, C. - E., Villemure, I., and Moreau, A., Biomechanical simulations of the scoliotic deformation process in the pinealectomized chicken: a preliminary study, Scoliosis, vol. 2. 2007.
M. Orozco, Biomolecular simulations. An overview. IV Spanish Portuguese Biophysical Congress, 2010.
BioNMR http://mmb.irbbarcelona.org/BioNMR2012. 2012.

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