Publications

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Jost, G., Jin, H., Labarta, J., Giménez, J. & Caubet, J.J. Performance Analysis of Multilevel Parallel Applications on Shared Memory Architectures. (2003).
Holanda, R., Verdú, J., García, J. & Valero, M. Performance Analysis of New Packet Trace Compression TCP Flow Clustering. (2005).
Onggo, B.S.S., Montañola-Sales, C. & Casanovas-Garcia, J. Performance Analysis of Parallel Demographic Simulation. Proceedings of the 24th European Simulation and Modelling Conference 142-148 (2010).
Guitart, J., Torres, J., Ayguadé, E. & Bull, M. Performance Analysis of Parallel Java Applications on Shared-memory Systems. 30th International Conference on Parallel Processing (ICPP'01) 357-364 (2001).doi:http://dx.doi.org/10.1109/ICPP.2001.952081
Sánchez, F., Salami, E., Ramirez, A. & Valero, M. Performance Analysis of Sequence Alignment Applications. IISWC, IEEE Internacional Symposium on Workload Characterization (2006).
Schulz, M., Bhatele, A., Belak, J., Bremer, P.-T., Casas, M., Bronevetsky, G., Gamblin, T., Isaacs, K., Laguna, I., Levine, J., Pascucci, V., Richards, D. & Rountree, B. Performance Analysis Techniques for the Exascale Co-Design Process. Proceedings of International Conference on Parallel Computing (PARCO) (2013).
González, J., Gimenez, J. & Labarta, J. Performance Analytics: understanding parallel applications using cluster and sequence analysis. 5th International Workshop on Parallel Tools for High Performance Computing (2013).
Rico, A., Derby, J.H., Montoye, R.K., Heil, T.H., Cher, C.-Y. & Bose, P. Performance and Power Evaluation of an In-line Accelerator. 2010 ACM International Conference on Computing Frontiers (2010).
Pericas, M., Ayguadé, E., Zalamea, J., Llosa, J. & Valero, M. Performance and Power Evaluation of Clustered VLIW Processors with Functional Units. (2004).
Álvarez, M., Salami, E., Ramirez, A. & Valero, M. A Performance Characterization of High Definition Digital Video Decoding Using H.264/AVC. 2005 IEEE International Symposium on Workload Characterization (IISWC-2005) 24-33 (2005).
González, J., Giménez, J. & Labarta, J. Performance Data Extrapolation in Parallel Codes. ICPADS '10: Proceedings of the 16th International Conference on Parallel and Distributed Systems (2010).
Álvarez, M., Salami, E., Ramirez, A. & Valero, M. A Performance Evaluation of High Definition Digital Video Decoding Using the H.264/AVC Standard. ACACES 2005, Poster Abstracts. Advanced Computer Architecture and Compilation for Embedded Systems 255-258 (2005).
Álvarez, M., Ramirez, A., Valero, M., Azevedo, A., Meenderinck, C. & Juurlink, B. Performance Evaluation of Macroblock-level Parallelization of H.264 Decoding on a cc-NUMA Multiprocessor Architecture. Avances en Sistemas e Informática 6, 219-228 (2009).
Álvarez, M., Ramirez, A., Valero, M., Azevedo, A., Meenderinck, C. & Juurlink, B. Performance Evaluation of Macroblock-level Parallelization of H.264 Decoding on a cc-NUMA Multiprocessor Architecture. 4CCC. 4th Colombian Computing Conference, Bucaramanga (Colombia) (2010).
Carrera, D., Guitart, J., Beltran, V., Torres, J. & Ayguadé, E. Performance Impact of the Grid Middleware. Engineering the Grid: Status and Perspective 235-249 (2006).
Ramirez, A., Prat, O., Labarta, J. & Valero, M. Performance Impact of the Interconnection Network on MareNostrum Applications. 1st Workshop on Interconnection Network Architectures: On-Chip, Multi-Chip (INA-OCMC 2007) (2007).
Álvarez, M., Salami, E., Labarta, J. & Valero, M. Performance Impact of Unaligned memory Operations in SIMD Extensions for Video CODEC Applications. IEEE International Symposium on Performance Analysis of Systems and Software (ISPASS 2007) 62-71 (2007).
Beltran, V., Guitart, J., Carrera, D., Torres, J., Ayguadé, E. & Labarta, J. Performance Impact of Using SSL on Dynamic Web Applications. XV Jornadas de Paralelismo 471-476 (2004).at <http://www.bsc.es/media/389.pdf>
Polo, J., Carrera, D., Becerra, Y., Beltran, V., Torres, J. & Ayguadé, E. Performance Management of Accelerated MapReduce Workloads in Heterogeneous Clusters. (2010).
Snavely, A., Gao, X., Lee, C., Carrington, L., Wolter, N., Labarta, J., Giménez, J. & Jones, P. Performance Modeling of HPC Applications. (2003).
Badia, R.M., Bubak, M., Funika, W. & Smetek, M. Performance monitoring of GRID superscalar applications with OCM-G. (2005).
Badia, R.M., Sirvent, R., Bubak, M., Funika, W. & Machner, P. Performance monitoring of GRID superscalar with OCM-G/G-PM: Integration Issues. (2008).
Badia, R.M., Sirvent, R., Bubak, M., Funika, W. & Machner, P. Performance Monitoring of Grid Superscalar with OCM-G/G-PM: Tuning and Improvements. (2007).
Badia, R.M., Sirvent, R., Bubak, M., Funika, W. & Machner, P. Performance Monitoring of Grid Superscalar with OCM-G/G-PM: Tuning and Improvements. (2008).
Badia, R.M., Sirvent, R., Bubak, M., Funika, W. & Machner, P. Performance Monitoring of Grid Superscalar:Visualization Models. (2008).
Reyes, S., Muñoz-Caro, C., Niño, A., Badia, R.M. & Cela, J.M. Performance of computation-intensive, parameter sweep applications on Internet-based Grids of computers. The mapping of molecular potential energy hypersurfaces. (2007).
Klamt, A., Mennucci, B., Tomasi, J., Barone, V., Curutchet, C., Orozco, M. & Luque, F.J. On the performance of continuum solvation methods. A comment on Universal Approaches to Solvation Modeling. (2009).at <http://pubs.acs.org/doi/abs/10.1021/ar800187p>
Huoponen, K., Pérez, C., Baldasano, J.M., Tesche, M., Schladitz, A., Freudenthaler, V., Heese, B., Esselborn, M., Weinzieri, B. & Von Hoyningen-Huene, W. Performance of DREAM Dust Model during the SAMUN-I Field Campaign. (2008).
Cuvelier, C., Thunis, P., Karam, D., Schaap, M., Hendriks, C., Kranenburg, R., Fagerli, H., Nyiri, A., Simpson, D., Wind, P., Bessagnet, B., Colette, A., Terrenoire, E., Rouïl, L., Stern, R., Graff, A., Baldasano, J.M. & Pay, M.T. Performance of European chemistry-transport models as function of horizontal spatial resolution. 14th annual EMEP TFMM meeting , (2013).
Navarro, C., Ramirez, A., Larriba-Pey, J.L. & Valero, M. On the Performance of Fetch Engines Running DSS Workloads. 6th International Euro-Par Conference (EuroPar'2000) 591-595 (2000).
Banás, P., Hollas, D., Zgarbová, M., Jurecka, P., Orozco, M., Cheatham, T.E., Sponer, J. & Otyepka, M. Performance of molecular mechanics force-fields for RNA simulations. Stability of UUCG and GNRA hairpins. (2010).at <http://pubs.acs.org/doi/abs/10.1021/ct100481h>
Soteras, I., Forti, F., Orozco, M. & Luque, F.J. Performance of the IEF-MST Solvation Continuum Model in a Blind Test Prediction of Hydration Free Energies. (2009).at <http://pubs.acs.org/doi/abs/10.1021/jp903514u>
Soteras, I., Orozco, M. & Luque, F.J. Performance of the IEF-MST solvation continuum model in the SAMPL2 blind test prediction of hydration and tautomerization free energies. (2010).at <http://www.springerlink.com/content/t04014112597w443/>
Morad, T., Weiser, U., Kolodny, A., Valero, M. & Ayguadé, E. Performance, Power Efficiency and Scalability of Asymmetric Cluster Chip Multiprocessors. (2006).
Badia, R.M., Escalé, F., Gabriel, E., Giménez, J., Keller, R., Labarta, J. & Müller, M.S. Performance Prediction in a Grid Environment. (2003).
Corbalán, J., Martorell, X. & Labarta, J. Performance-Driven Processor Allocation. (2005).
Polo, J., Carrera, D., Becerra, Y., Torres, J., Ayguadé, E., Steinder, M. & Whalley, I. Performance-Driven Task Co-Scheduling for MapReduce Environments. (2010).
Guallar, V., Baik, M.-H., Lippard, S.J. & Friesner, R.A. Peripheral heme substituents control the hydrogen-atom abstraction chemistry in cytochromes P450. Proceedings of the National Academy of Sciences of the United States of America 100, 6998-7002 (2003).
Pipirou, Z., Guallar, V., Basran, J., Metcalfe, C.L., Murphy, E.J., Bottrill, A.R., Mistry, S.C. & Raven, E.L. Peroxide-dependent formation of a covalent link between Trp51 and the heme in cytochrome c peroxidase. Biochemistry 48, 3593-9 (2009).
Baldasano, J.M. Perspectives històriques des de l'IPCC. (2009).
Sloot, P., Talia, D., Reuter, A., Rienhoff, O., Ruter, T., Ullmann, K., Schwiegelshohn, U., Badia, R.M., Bubak, M., Danelutto, M., Dustdar, S., Gagliardi, F., Geiger, A., Hluchy, L., Kranzlmuller, D., Laure, E., Priol, T., Reinefeld, A. & Resch, M. Perspectives on grid computing. (2010).
Liu, Q., Jimenez, V., Moreto, M., Abella, J., Francisco, & Cazorla, F.J. Per-task Energy Accounting in Computing Systems. In IEEE Computer Architecture Letters (CAL) (2013).doi:http://people.ac.upc.edu/jabella/camerareadyIEEECAL.pdf‎
Reine, S. & et al., Petascaling and Performance Analysis of DALTON on Different Platforms. PRACE white paper (2012).
Deniz, O., Flores, O., Battistini, F., Pérez, A., Soler-López, M. & Orozco, M. Physical properties of naked DNA influence nucleosome positioning and correlate with transcription start and termination sites in yeast. BMC genomics 12, 489 (2011).
Marti, A., Cox, P. & Sitch, S. Plant Nitrogen Uptake in Terrestrial Biogeochemical Models. Geophysical Research Abstracts Vol. 15, (2013).
Queralt, A. & Teniente, E. A platform independent model for the electronic marketplace domain. Software and System Modeling 7, 219-235 (2008).
Badia, R.M. Platform Unaware Programing Models. (2007).
Foina, A.G., Ramírez-Fernandez, F.J., El-Deeb, A. & Badia, R.M. Player Tracker - A Tool to Analyze Sport Players using RFID. (2010).
Foina, A.G., Planas, J., Badia, R.M. & Ramírez-Fernandez, F.J. P-Means, a Parallel Clustering Algorithm for a Heterogeneous Multi-Processor Environment. Proceedings of the HPCS 2011 (2011).
Ferrer-Costa, C., Gelpí, J.L., Zamakola, L., Parrága, I., de la Cruz, X. & Orozco, M. PMUT: A Web-based tool for the annotation of pathological mutations on proteins. (2005).at <http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15879453&query_hl=1&itool=pubmed_DocSum>

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