Publications

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2023

EvolClustDB: Exploring Eukaryotic Gene Clusters with Evolutionarily Conserved Genomic Neighbourhoods

Journal of Molecular Biology

M. Marcet-Houben, I. Collado-Cala, D. Fuentes-Palacios, A. D. Gómez, M. Molina, A. Garisoain-Zafra, U. Chorostecki, and T. Gabaldón
A hybrid approach to assess the structural impact of long noncoding RNA mutations uncovers key

IUBMB Life

E. Aydın, E. Saus, U. Chorostecki, and T. Gabaldón
Lecture Notes in Computer ScienceAdvances in Information RetrievalBioASQ at CLEF2023: The Eleventh Edition of the Large-Scale Biomedical Semantic Indexing and Question Answering Challenge

A. Nentidis, A. Krithara, G. Paliouras, E. Farre-Maduell, S. Lima-Lopez, and M. Krallinger
High-Throughput Prediction of the Impact of Genetic Variability on Drug Sensitivity and Resistance Patterns for Clinically Relevant Epidermal Growth Factor Receptor Mutations from Atomistic

Journal of Chemical Information and Modeling

A. Suriñach, A. Hospital, Y. Westermaier, L. Jordá, S. Orozco-Ruiz, D. Beltrán, F. Colizzi, P. Andrio, R. Soliva, M. Municoy, J. Lluis Gelpí, and M. Orozco
The landscape of expression and alternative splicing variation across human traits

Cell Genomics

R. García-Pérez, J. Miguel Ramirez, A. Ripoll-Cladellas, R. Chazarra-Gil, W. Oliveros, O. Soldatkina, M. Bosio, P. Joris Rognon, S. Capella-Gutierrez, M. Calvo, F. Reverter, R. Guigó, F. Aguet, P. G. Ferreira, K. G. Ardlie, and M. Melé
Multiplexed target enrichment of coding and non-coding transcriptomes enables studying Candida spp. infections from human derived samples

Frontiers in Cellular and Infection Microbiology

H. Hovhannisyan, A. Rodríguez, E. Saus, M. Vaneechoutte, and T. Gabaldón
Client Applications and Server-Side Docker for Management of RNASeq and/or VariantSeq Workflows and Pipelines of the GPRO Suite

Genes

A. IbrahemHafez, B. Soriano, A. Allah Elsayed, R. Futami, R. Ceprian, R. Ramos-Ruiz, G. Martinez, F. Jose Roig, M. Angel Torres-Font, F. Naya-Catala, J. Alvar Calduch-Giner, L. Trilla-Fuertes, A. Gamez-Pozo, V. Arnau, J. Maria Sempere-Luna, J. Perez-Sánchez, T. Gabaldón, and C. Llorens
Are Deep Learning Structural Models Sufficiently Accurate for Virtual Screening? Application of Docking Algorithms to AlphaFold2 Predicted Structures

Journal of Chemical Information and Modeling

A. M. Díaz-Rovira, H. Martín, T. Beuming, L. Díaz, V. Guallar, and S. S. Ray
AsiteDesign: a Semirational Algorithm for an Automated Enzyme DesignAsiteDesign: a Semirational Algorithm for an Automated Enzyme Design

The Journal of Physical Chemistry B

S. Roda, H. Terholsen, J. Ruth Heike Meyer, A. Cañellas-Solé, V. Guallar, U. Bornscheuer, and M. Kazemi
A phenotype driven integrative framework uncovers molecular mechanisms of a rare hereditary thrombophilia

PLOS ONE

N. Malod-Dognin, G. Ceddia, M. Gvozdenov, B. Tomić, S. Dunjić Manevski, V. Djordjević, and N. Pržulj

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