Publications

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Author Title Type [ Year(Asc)]
2013
V. Puzyrev, Koldan, J., de la Puente, J., and Cela, J. M., A Parallel Finite-element Approach to CSEM Forward Modeling Problems, 75th EAGE Conference & Exhibition. pp. Tu-11-15, 2013.
J. Koldan, Puzyrev, V., and Cela, J. M., Parallel Finite-Element Method for 3-D Electromagnetic Modelling in Geophysics, 5th International Symposium on Three-Dimensional Electromagnetics – 3DEM-5 , Sapporo, Japan. 2013.
V. Puzyrev, Koldan, J., de la Puente, J., Houzeaux, G., Vázquez, M., and Cela, J. M., A parallel finite-element method for three-dimensional controlled-source electromagnetic forward modelling, Geophysical Journal International. Oxford University Press, 2013.
V. Puzyrev, Koldan, J., de la Puente, J., and Cela, J. M., Parallel Finite-Element Modeling of 3-D Electromagnetic Problems Using Potentials, 8th International Marine Electromagnetics conference – MARELEC , Hamburg, Germany. 2013.
C. Montañola-Sales, Casanovas-García, J., Cela, J. M., Onggo, B. S. S., and Kaplan-Marcusan, A., Parallel simulation of large population dynamics, ACM SIGSIM Conference on Principles of Advanced Discrete Simulation (PADS). ACM SIGSIM, Montreal, Canada, 2013.
C. Montañola-Sales, Casanovas-García, J., Cela, J. M., Onggo, B. S. S., and Kaplan-Marcusan, A., Parallel simulation of large population dynamics, Winter Simulation Conference. Informs, Washington D.C., 2013.
X. Sáez, Casoni, E., Houzeaux, G., and Vázquez, M., A Parallel Solid Mechanics Solver for Multi‐physics Finite Element Problems, in Whitepaper of PRACE-2IP project, Partnership for Advanced Computing in Europe, 2013.
G. Houzeaux, de la Cruz, R., Owen, H., and Vázquez, M., Parallel uniform mesh multiplication applied to a Navier-Stokes solver, Computer & Fluids, vol. 80. pp. 142-151, 2013.
U. Milic, Gelado, I., Puzovic, N., Ramirez, A., and Tomasevic, M., Parallelizing general histogram application for CUDA architectures, 2013 International Conference on Embedded Computer Systems: Architectures, Modeling, and Simulation (SAMOS XIII). Samos, Greece, pp. 11–18, 2013.
T. Ungerer, Bradatsch, C., Gerdes, M., Kluge, F., Jahr, R., Mische, J., Fernandes, J., Zaykov, P., Zlatko, P., Boddeker, B., Kehr, S., Regler, H., Hugl, A., Rochange, C., Ozaktas, H., Cassé, H., Armelle, B., Sainrat, P., Lay, N., Broster, I., George, D., Panic, M., Quiñones, E., Cazorla, F., Abella, J., Uhrig, S., Rohde, M., and Pyka, A., parMERASA Multi-Core Execution of Parallelised Hard Real-Time Applications Supporting Analysability, Euromicro Conference on Digital System Design, DSD 2013. IEEE Computer Society, Santander, Spain, pp. 363–370, 2013.
A. Madadkar-Sobhani and Guallar, V., PELE web server: atomistic study of biomolecular systems at your fingertips., Nucleic acids research, vol. 41, no. Web Server issue. pp. W322-8, 2013.
M. Schulz, Bhatele, A., Belak, J., Bremer, P. - T., Casas, M., Bronevetsky, G., Gamblin, T., Isaacs, K., Laguna, I., Levine, J., Pascucci, V., Richards, D., and Rountree, B., Performance Analysis Techniques for the Exascale Co-Design Process, Proceedings of International Conference on Parallel Computing (PARCO). 2013.
J. González, Gimenez, J., and Labarta, J., Performance Analytics: understanding parallel applications using cluster and sequence analysis, 5th International Workshop on Parallel Tools for High Performance Computing. 2013.
C. Cuvelier, Thunis, P., Karam, D., Schaap, M., Hendriks, C., Kranenburg, R., Fagerli, H., Nyiri, A., Simpson, D., Wind, P., Bessagnet, B., Colette, A., Terrenoire, E., Rouïl, L., Stern, R., Graff, A., Baldasano, J. M., and Pay, M. T., Performance of European chemistry-transport models as function of horizontal spatial resolution, 14th annual EMEP TFMM meeting, vol. . EMEP, 6-8, May, 2013. Zagreb (Croatia), 2013.
Q. Liu, Jimenez, V., Moreto, M., Abella, J., and Cazorla, F., Per-task Energy Accounting in Computing Systems, In IEEE Computer Architecture Letters (CAL), vol. 13. pp. 1-6, 2013.
A. Marti, Cox, P., and Sitch, S., Plant Nitrogen Uptake in Terrestrial Biogeochemical Models, Geophysical Research Abstracts, vol. Vol. 15. 2013.
J. L. Berral, Gavaldà, R., and Torres, J., Power-aware Multi-DataCenter Management usingMachine Learning, 2nd International Workshop on Power-aware Algorithms, Systems, and Architectures. IEEE Computer Society Conference Publishing Services, Pittsburgh, United States, pp. 858–867, 2013.
S. Karthikeyan, Carpenter, P., and Ramirez, A., Power/Performance evaluation of Energy Efficient Ethernet (EEE) for High Performance Computing, IEEE International Symposium on Performance Analysis of Systems and Software (ISPASS-2013). Austin, United States, 2013.
J. M. Baldasano and Gassó, S., Presentació projecte APPRAISAL. Model per avaluació de mesures, Jornada Plans de millora de la qualitat de l’aire. Mesures i experiències, vol. . Generalitat de Catalunya, 31 Octubre, 2013. Barcelona, Spain, 2013.
F. Cazorla, Quiñones, E., Vardanega, T., Cucu, L., Triquet, B., Bernat, G., Berger, E., Abella, J., Wartel, F., Houston, M., Santinelli, L., Kosmidis, L., Lo, C., and Maxim, D., PROARTIS: Probabilistically Analyzable Real-Time Systems, ACM Trans. Embed. Comput. Syst., vol. 12. ACM, New York, NY, USA, pp. 94:1–94:26, 2013.
L. Kosmidis, Curtsinger, C., Quiñones, E., Abella, J., Berger, E. D., and Cazorla, F., Probabilistic Timing Analysis on Conventional Cache Designs, ACM/IEEE Design, Automation, and Test in Europe (DATE). ACM, IEEE, Grenoble, France, pp. 603–606, 2013.
V. Subotic, Brinkmann, S., Marjanovic, V., Badia, R. M., Gracia, J., Niethammer, C., Ayguadé, E., Labarta, J., and Valero, M., Programmability and portability for exascale: Top down programming methodology and tools with StarSs, Journal of Computational Science, vol. 4. pp. 450–456, 2013.
J. Ciesko, Bueno-Hedo, J., Puzovic, N., Ramirez, A., Badia, R. M., and Labarta, J., Programmable and Scalable Reductions on Clusters, The 27th IEEE International Parallel and Distributed Processing Symposium (IPDPS 2013). IEEE, Boston, United States, pp. 560–568, 2013.
E. Tejedor, Programming and Parallelising Applications for Distributed Infrastructures, Universitat Politecnica de Catalunya (UPC), 2013.
D. Lezzi, Rafanell, R., Torser, E., Giovanni, R. D., Blanquer, I., and Badia, R. M., Programming ecological niche modeling workflows in the cloud, Proceedings of the 27th IEEE International Conference on Advanced Information Networking and Applications (AINA-2013). IEEE CPS, 2013.
J. M. Baldasano, Projecte ESCAT: Escenaris Climàtics amb Alta Resolució per a Catalunya: 2000-2050, Ecotendències: Canvi climàtic. Hi som a temps, de mitigar el canvi climàtic?, COSMOCAIXA, vol. . COSMOCAIXA, 27 November, 2013. Barcelona (Spain), 2013.
X. Teruel, Klemm, M., Li, K., Martorell, X., Olivier, S., and Terboven, C., A Proposal for Task-Generating Loops in OpenMP, 9th International Workshop on OpenMP (IWOMP). Springer, Canberra, Australia, pp. 1–14, 2013.
T. Meyer, Gabelica, V., Grubmüller, H., and Orozco, M., Proteins in the gas phase. WIRES Comput.Mol.Sci, 2013.
B. Jiménez-García, Pons, C., and Fernández-Recio, J., pyDockWEB: a web server for rigid-body protein-protein docking using electrostatics and desolvation scoring., Bioinformatics (Oxford, England), vol. 29, no. 13. pp. 1698-9, 2013.
V. A. Gil and Guallar, V., pyRMSD: a Python package for efficient pairwise RMSD matrix calculation and handling., Bioinformatics (Oxford, England), vol. 29, no. 18. pp. 2363-4, 2013.
V. Guallar, QM and MM methods: Obtaining an electronic and atomic view of nature, 2nd Synthetic Biology Minisymposium, National University of Singapore, Singapor. 2nd Synthetic Biology Minisymposium, Singapore , 2013.
V. Guallar, QM and MM methods: Obtaining an electronic and atomic view of nature. 2nd Synthetic Biology Minisymposium, National University of Singapore, Singapore, 2013.
V. Guallar, QM and MM methods: Obtaining an electronic and atomic view of nature, 2nd Congress of Computational Biology and Bioinformatics, Manizales, Colombia. 2nd Congress of Computational Biology and Bioinformatics, Manizales, Colombia, 2013.
V. Guallar, QM and MM methods: Obtaining an electronic and atomic view of nature , Biology centre of the Academy of Sciences, Czech Republic. 2013.
J. M. Baldasano, Qualitat de l'Aire i Salut, 5ª Jornades d’Anàlisi i Debat sobre les Ciències Ambientals DIÀLEGS AMBIENTALS’13 MOBILITAT I SALUT, ACCA, vol. . Institut d’Estudis Catalans, 3 Octubre, 2013. Barcelona (España), 2013.
D. Nurbakova, Rusakov, S., and Alexandrov, V., Quantifying Uncertainty in Phylogenetic Studies of the Slavonic Languages, submitted to ICCS2013. 2013.
P. Wittek, Lim, I. K., and Rubio-Campillo, X., Quantum probabilistic description of dealing with risk and ambiguity in foraging decisions, 7th International Quantum Interaction Symposium, Leicester, United Kingdom. 2013.
A. Rico, Raising the Level of Abstraction: Simulation of Large Chip Multiprocessors Running Multithreaded Applications, Universitat Politecnica de Catalunya (UPC), 2013.
A. Jokanovic, Prisacari, B., Rodriguez, G., and Minkenberg, C., Randomizing Task Placement Does Not Randomize Traffic (Enough), Proceedings of the 2013 Interconnection Network Architecture: On-Chip, Multi-Chip. ACM, pp. 9–12, 2013.
H. Owen, Houzeaux, G., Samaniego, C., Lesage, A. C., and Vázquez, M., Recent ship hydrodynamics developments in the parallel two-fluid flow solver Alya, vol. 80. pp. 168-177, 2013.
H. Owen, Houzeaux, G., Samaniego, C., Lesage, A. C., and Vázquez, M., Recent ship hydrodynamics developments in the parallel two–fluid flow solver Alya, Computers & Fluids, vol. 80. pp. 168-177, 2013.
M. Duric, Palomar, O., and Smith, A., ReCompAc: Reconfigurable Compute Accelerator, International Conference on Reconfigurable Computing and FPGAs 2013. 2013.
R. C. Figueroa, Lopez, M. A., Gonzalez, E. J. P., Gil, M., and Martorell, X., Rendering of Bezier surfaces on handheld devices, Journal of WSCG (Plzen, Print), vol. 21. pp. 205–214, 2013.
L. Valentova, Gallovic, F., Ruzek, B., and de la Puente, J., Resolution of group velocity models obtained by adjoint inversion in the Czech Republic region, Geophysical Research Abstracts, vol. 15. pp. EGU2013-1182, 2013.
M. Tillenius, Larsson, E., Badia, R. M., and Martorell, X., Resource-aware task scheduling., 4th Workshop on Parallel Programming and Run-Time Management Techniques for Many-core Architectures (PARMA). Berlin, Germany, pp. 6–11, 2013.
J. Guitart, Macías, M., Djemame, K., Kirkham, T., Jiang, M., and Armstrong, D., Risk-driven Proactive Fault-tolerant Operation of IaaS Providers, 5th IEEE International Conference on Cloud Computing Technology and Science (CloudCom'13) (Short Paper). IEEE Computer Society, Bristol, UK, pp. 427-432, 2013.
V. Alexandrov, Scalable Algorithms. Taylor and Francis, 2013.
C. Cuvelier, Thunis, P., Karam, D., Schaap, M., Hendriks, C., Kranenburg, R., Fagerli, H., Nyiri, A., Simpson, D., Wind, P., Schulz, M., Bessagnet, B., Colette, A., Terrenoire, E., Rouïl, L., Stern, R., Graff, A., Baldasano, J. M., and Pay, M. T., ScaleDep: Performance of European chemistry-transport models as function of horizontal spatial resolution, in MSC-W Technical Report, vol. 1/2013, Oslo, Norway: Meteorological Synthesizing Centre-West of EMEP (MSC-W of EMEP), 2013, pp. 1-62.
A. Artigues, Tripiana, C., Vicente, D., and Cucchietti, F., Scientific Big Data Visualization: a coupled tools approach, ICBT 2013: International Conference on Biomedical Technology. 2013.
I. H. Moal, Moretti, R., Baker, D., and Fernández-Recio, J., Scoring functions for protein-protein interactions., Current opinion in structural biology, vol. 23, no. 6. pp. 862-7, 2013.

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