Publications

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J. Ejarque, de Palol, M., Goiri, Í., Julià, F., Guitart, J., Badia, R. M., and Torres, J., Exploiting Semantics and Virtualization for SLA-driven Resource Allocation in Service Providers, Concurrency and Computation: Practice and Experience, vol. 22, no. 5. pp. 541-572, 2010.
P. Sfriso, Hospital, A., Emperador, A., and Orozco, M., Exploration of conformational transition pathways from coarse-grained simulations., Bioinformatics (Oxford, England), vol. 29, no. 16. pp. 1980-6, 2013.
B. P. Cossins, Hosseini, A., and Guallar, V., Exploration of Protein Conformational Change with PELE and Meta-Dynamics, Journal of Chemical Theory and Computation, vol. 8. pp. 959-965, 2012.
M. Jowkar, de la Cruz, R., and Cela, J. M., Exploring a Novel Gathering Method for Finite Element Codes on the Cell/B.E. Architecture. In Proceedings of the 2010 ACM/IEEE International Conference for High Performance Computing, Networking, Storage and Analysis, SC'10, 2010.
M. Orozco, Exploring DNA folding and unfolding from molecular dynamics simulations. Symposium on nucleic acid chemistry, structure and interactions, 2010.
M. Candotti, Pérez, A., Ferrer-Costa, C., Rueda, M., Meyer, T., Gelpí, J. L., and Orozco, M., Exploring early stages of the chemical unfolding of proteins at the proteome scale., PLoS computational biology, vol. 9, no. 12. p. e1003393, 2013.
M. Candotti, Pérez, A., Ferrer-Costa, C., Rueda, M., Meyer, T., Gelpí, J. L., and Orozco, M., Exploring early stages of the chemical unfolding of proteins at the proteome scale., PLoS Comput Biol, vol. 9, no. 12. p. e1003393, 2013.
K. Borrelli, Cossins, B. P., and Guallar, V., Exploring hierarchical refinement techniques for induced fit docking with protein and ligand flexibility., Journal of computational chemistry, vol. 31, no. 6. pp. 1224-35, 2010.
F. Guttler, Alleaume, S., Corbane, C., Nin, J., Poncelet, P., and Teisseire, M., Exploring High Repetitivity Remote Sensing Time Series For Mapping And Monitoring Natural Habitats - A New Approach Combining Obia And K-Partite Graphs, Int. Geoscience and Remote Sensing Symposium. quebec, Canada, pp. 3930–3933, 2014.
J. R. Lopez-Blanco, Reyes, R., Aliaga, J. I., Badia, R. M., Pablo, C., and Quintana-Ortí, E. S., Exploring large macromolecular functional motions on clusters of multicore processors, Journal of Computational Physics, vol. 246. pp. 275–288, 2013.
P. D. Dans, Pérez, A., Faustino, I., Lavery, R., and Orozco, M., Exploring polymorphisms in B-DNA helical conformations., Nucleic acids research, vol. 40, no. 21. pp. 10668-78, 2012.
M. Orozco, “Exploring protein flexibility”. Plenary Lecture. Cambridge University. 2013.
J. R. Blas, López-Bes, J. M., Márquez, M., Sessler, J. L., Luque, F. J., and Orozco, M., Exploring the dynamics of Calix[4]pyrrole: The effect of solvent and fluorine substitution. Chem.Eur.J., 2006.
A. Pérez, Blas, J. R., Rueda, M., López-Bes, J. M., de la Cruz, X., and Orozco, M., Exploring the essential dynamics of B-DNA. Journal of Chemical Theory and Computation., 2005.
F. Freitag, Caubet, J. J., Farreras, M., Cortes, T., and Labarta, J., Exploring the Predictability of MPI Messages. 17th International Parallel and Distributed Processing Symposium (IPDPS-2003), 2003.
J. R. Goñi, Vaquerizas, J. M., Dopazo, J., and Orozco, M., Exploring the reasons for the large density of triplex-forming oligonucleotide target sequences in the human genome. BMC Genomics, 2006.
A. Emperador, Carrillo, O., Rueda, M., and Orozco, M., Exploring the suitability of coarse-grained techniques fort he representation of protein dynamics. Biophysical Journal, 95, 2127-2138., 2008.
T. Püschel, Borissov, N., Neumann, D., Macías, M., Guitart, J., and Torres, J., Extended Resource Management Using Client Classification and Economic Enhancements, 17th eChallenges e-2007 Conference & Exhibition (e-2007). The Hague, The Netherlands, pp. 65-72, 2007.
T. Püschel, Borissov, N., Neumann, D., Macías, M., Guitart, J., and Torres, J., Extended Resource Management Using Client Classification and Economic Enhancements, in Economic Models and Algorithms for Distributed Systems, Birkhäuser-Springer, 2009, pp. 129-141.
M. Milovanovic, Unsal, O., Cristal, A., Stipić, S., Zyulkyarov, F., and Valero, M., Extending C/C++ Language with Atomic Constructs, in II Congreso Español de Informática (CEDI 2007), Zaragoza, Spain, 2007.
T. Cortes and Labarta, J., Extending Heterogeneity to RAID level 5. USENIX Annual Technical Conference, 2001.
E. Ayguadé, Badia, R. M., Bellens, P., Cabrera, D., Duran, A., González, M., Igual, F., Jiménez-González, D., Labarta, J., Martinell, L., Martorell, X., Mayo, R., Pérez, J. M., and Ju, H. B., Extending OpenMP to Survive the Heterogeneous Multi-core Era. International Journal of Parallel Programming, vol. 38, nos: 5-6, pages: 440-459, 2010.
M. Klemm, Duran, A., Tian, X., Saito, H., Caballero, D., and Martorell, X., Extending OpenMP* with vector constructs for modern multicore SIMD architectures, Proceedings of the 8th international conference on OpenMP in a Heterogeneous World. Springer-Verlag, Berlin, Heidelberg, pp. 59–72, 2012.
A. Duran, Pérez, J. M., Ayguadé, E., Badia, R. M., and Labarta, J., Extending the OpenMP Tasking Model to Allow Dependent Tasks. proceedings of International Workshop on OpenMP, 2008.
E. Naboni, Zhang, Y., Maccarini, A., Hirsch, E., and Lezzi, D., Extending the use of parametric simulation in practice through a cloud based online service, 1st IBPSA-Italy Conference: BSA2013 Building Simulation Applications Conference. Bolzano University Press, Bolzano, Italy, pp. 105–112, 2013.
G. Houzeaux, Aubry, R., and Vázquez, M., Extension of fractional step techniques for incompressible flows: The preconditioned Orthomin(1) for the pressure Schur complement, Computers & Fluids, vol. 44. pp. 297-313, 2011.
I. Rodero, Guim, F., Corbalán, J., and Labarta, J., Extension of the JSDL for Parallel Jobs. XVII Jornadas de Paralelismo, pp. 295-300, Albacete, Spain, 2006.
F. Forti, Barril, X., Luque, F. J., and Orozco, M., Extension of the MST continuum solvation model to the RM1 semiempirical Hamiltonian. J.Comp.Chem, 29, 578-587, 2008.
E. Ayguadé, Badia, R. M., Igual, F., Labarta, J., Mayo, R., and Quintana-Ortí, E. S., An Extension of the StarSs Programming Model for Platforms with Multiple GPUs. Proceedings of the EuroPar Conference (EuroPar 2009), 2009.
E. Ayguadé, Beyer, J., Duran, A., Ferrer, R., Haab, G., Li, K., and Massaioli, F., An extension to improve OpenMP tasking control. 6th International Workshop on OpenMP (IWOMP 2010), 2010.
R. Aubry, Houzeaux, G., and Vázquez, M., Extensions of a surface remeshnig approach, 49th AIAA Aerospace Sciences Meeting. Orlando (USA), 2011.
S. Basart, Dulac, F., Baldasano, J. M., Nabat, P., Mallet, M., Solmon, F., Laurent, B., Vincent, J., Menut, L., L. Amraoui, E., Sic, B., Chaboureau, J. - P., Léon, J. - F., Schepanski, K., Renardj, J. - B., Ravetta, F., Pelon, J., Biagio, D. C., Formenti, P., Chiapello, I., Roujean, J. - L., Ceamanos, X., Carrer, D., Sicard, M., Delbarre, H., Roberts, G., Junkermann, W., and Attié, J. - L., Extensive Comparison between Dust Models and Observations in the Western Mediterranean for the Summer 2012 Pre-ChArMEx/TRAQA Campaign, AGU Fall Meeting 2014. AGU Fall meeting 2014, San Francisco (USA), 15-19 December, 2014.
A. Goyeneche, Guim, F., Rodero, I., Terstyanszky, G., and Corbalán, J., Extracting performance hints for Grid Users using data mining techniques: a case study in the NGS. Mediterranean Journal of Computers and Networks SPECIAL ISSUE on Data Mining Applications on Supercomputing and Grid Environments Volume 3, No. 2,p 52-61, 2007.
M. Casas, Servat, H., Badia, R. M., and Labarta, J., Extracting the optimal sampling frequency of applications using spectral analysis, Concurrency and Computation: Practice and Experience. John Wiley & Sons, Ltd, p. n/a–n/a, 2011.
A. Papayannis, Zhang, H. Q., Amiridis, V., Ju, H. B., Chourdakis, G., Georgoussis, G., Pérez, C., Chen, H. B., Goloub, P., Mamouri, R. E., Kazadzis, S., Paronis, D., Tsaknakis, G., and Baldasano, J. M., Extraordinary dust event over Beijing, China, during April 2006: Lidar, Sun photometric, satellite observations and model validation, Geophysical Research Letters, vol. 34, no. L07806. AMER GEOPHYSICAL UNION, UNITED STATES, pp. 1-5, 2007.
A. Papayannis, Fu, C. Y., Huaiqing, Z., Amiridis, V., Chourdakis, G., Georgoussis, G., Pérez, C., Chen, H. B., Goloub, P., Mamouri, R. E., Kazadzis, S., Paronis, D., Tsaknakis, G., and Baldasano, J. M., Extra-ordinary dust event over beijing, china during april 2006: lidar, sun photometric, satellite observations and model validation. XXIV International Union of Geodesy and Geophysics (IUGG) General Assembly, Perugia (Italy), 2007.
C. Marrero, Jorba, O., Cuevas, E., and Baldasano, J. M., Extreme Wind Event Over the Canary Islands Related o The Extratropical Storm Delta: Sensitivity Study with a Limited Area Model. IUGG 2007 Perugia, Session: MS013 Topographic Effects on Weather and Climate (ICDM), Perugia (Italia), 2007.

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