Publications

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M. King, Khan, A., Agarwal, A., Arcas, O., and Arvind, Generating Infrastructure for FPGA-Accelerated Applications, 23rd International Conference on Field Programmable Logic and Applications. IEEE, Porto, Portugal, pp. 1–6, 2013.
L. W. Hillier, Generation and annotation of the DNA sequences of human chromosomes 2 and 4. Nature, 2005.
G. Rodríguez, Badia, R. M., and Labarta, J., Generation of Simple Analytical Models for Message Passing Applications. 10th International Euro-Par Conference, 2004.
J. Martí, Geyer, A., and Folch, A., A genetic classification of collapse calderas based on field studies, analogue and theoretical modelling, THORDARSON, T., SELF, S., LARSEN, G., ROWLAND, S. K. & HOSKULDSSON, A. (eds) Studies in Volcanology: The Legacy of George Walker. Special Publications of IAVCEI, 2, 249?266. Geological Society, London, 2009.
M. Macías and Guitart, J., A Genetic Model for Pricing in Cloud Computing Markets, 26th ACM Symposium On Applied Computing (SAC'11). Taichung, Taiwan, pp. 113-118, 2011.
M. Orozco, Genome scale protein simulation. CASP7.5 Meeting, 2008.
R. G. S. P. Consortium and Torrents, D., Genome sequence of the Brown Norway rat yields insights into mammalian evolution. Nature, 2004.
A. Julià, Domènech, E., Chaparro, M., García-Sánchez, V., Gomollón, F., Panés, J., Mañosa, M., Barreiro-de Acosta, M., Gutiérrez, A., García-Planella, E., Aguas, M., Muñoz, F., Esteve, M., Mendoza, J. L., Vera, M., Márquez, L., Tortosa, R., López-Lasanta, M., Alonso, A., Gelpí, J. L., García-Montero, A. C., Bertranpetit, J., Absher, D., Myers, R. M., Gisbert, J. P., and Marsal, S., A genome-wide association study identifies a novel locus at 6q22.1 associated with ulcerative colitis., Hum Mol Genet, vol. 23, no. 25. pp. 6927-34, 2014.
A. Julià, Domènech, E., Ricart, E., Tortosa, R., García-Sánchez, V., Gisbert, J. P., Nos Mateu, P., Gutiérrez, A., Gomollón, F., Mendoza, J. L., García-Planella, E., Barreiro-de Acosta, M., Muñoz, F., Vera, M., Saro, C., Esteve, M., Andreu, M., Alonso, A., López-Lasanta, M., Codó, L., Gelpí, J. L., García-Montero, A. C., Bertranpetit, J., Absher, D., Panés, J., and Marsal, S., A genome-wide association study on a southern European population identifies a new Crohn's disease susceptibility locus at RBX1-EP300., Gut. 2013.
D. Torrents, Suyama, M., Zdobnov, E. M., and Bork, P., A genome-wide survey of human pseudogenes. Genome Res., 2003.
E. M. Novoa, Castro, M., Orozco, M., and de Pouplana., L. R., A genomics method to identify pathogenicity-related proteins. Application to aminoacyl-tRNA synthetase-like proteins. FEBS Lett., (2010), 584, 460-466., 2009.
F. Artigas, Marti, A., and Elefante, D., Geographic Information Sharing: A Regional Approach in Northern New Jersey, USA, Information Polity, vol. Vol. 14. 2009.
J. de la Puente, Ferrer, M., and Cela, J. M., Geological Complexity, Topography and Seismic Wave Modelling: Are Finite-Differences Up to the Challenge?, SIAM Conference on Mathematical and Computational Issues in the Geosciences, Padova, Italy. 2013.
D. Svozil, Marchán, I., Pérez, A., Cheatham, T. E., Forti, F., Luque, F. J., Orozco, M., and Sponer, J., Geometrical and Electronic Structure Variability of the Sugar-phosphate Backbone in Nucleic Acids. J. Phys. Chem. B, 112 (27), pp 8188?8197, 2008.
N. Utz, Meyer, T., Rink, G., Orozco, M., and Koslowski, T., Geometry, Dynamics, and Electronic Structure of DNA–Carbon Nanotube Hybrids, J. Phys. Chem. C, vol. 116 (20), pp 11278–11282. 2012.
M. Hanzich, de la Puente, J., and Ortigosa, F., Geophysical Imaging in High-Performance Computing Platforms in Spain, in Industrial Applications of High Performance Computing - Best Global Practices, Chapman and Hall/CRC Press, 2015, pp. 301-306.
C. Scaini, Bolic, T., Castelli, L., and Folch, A., A GIS-based tool for the estimation of impacts of volcanic ash dispersal on European air traffic, Proceedings of the 3rd SESAR Innovation Days. 2013.
O. Jorba, Basart, S., Baldasano, J. M., Spada, M., and DiTomaso, E., Global Aerosol Modeling at the BSC: Activities and developments, 6th ICAP meeting. 6th ICAP meeting, Boulder, Colorado (USA), October 21-24, 2014.
J. M. Baldasano and Jiménez-Guerrero, P., Global and regional interactions of air quality and climate, DEISA Advancing Science in Europe: 32-33, 2008.
P. Jiménez-Guerrero, Jorba, O., and Badia, A., Global chemical regimes for ozone formation in a global on-line chemical weather prediction model (NMMB/BSC-CHEM), 8th European Geosciences Union Conference (EGU) General Assembly. Geophysical Research Abstracts, vol. 13. European Geosciences Union (EGU), 3-8 April, 2011. Viena, Austria, 2011.
O. Jorba, Pérez, C., Haustein, K., Janjic, Z., Dabdub, D., Baldasano, J. M., Badia, A., and Spada, M., Global impact of NO2 photo-excitation using a global online chemical transport model. Geophysical Research Abstracts, Vol. 12, EGU2010-5248. Viena, 2010.
A. M. Sayer, Poulsen, C. A., Arnold, C., Campmany, E., Dean, S., Ewen, G. B. L., Grainger, R. G., Lawrence, B. N., Siddans, R., and Watts, P. D., Global retrieval of ATSR cloud parameters and evaluation (GRAPE): dataset assessment, Journal , vol. 11. Atmos. Chem. Phys. , pp. 3913-3936, 2011.
Y. Etsion, Ben-Nun, T., and Feitelson, D. G., A Global Scheduling Framework for Virtualization Environments, Workshop on System Management Techniques, Processes and Services (SMTPS). 2009.
B. Eguzkitza and Houzeaux, G., A Gluing Method for Non-Matching Meshes, vol. 110. Elsevier, Computers and Fluids, pp. 159-168, 2013.
A. G. Foina, Badia, R. M., and Ramírez-Fernandez, F. J., G-means Improved for Cell BE Environment. Facing the Multicore-Challenge, 2010.
D. A. Jiménez, Sánchez, R., Álvarez, C., Morillo-Pozo, J., Cabrera, D., Martorell, X., and Ayguadé, E., GPFPGA: entorno para la generación automática de códigos HDL portables entre FPGAs. X Jornadas de Computación Reconfigurable y Aplicaciones (JCRA'10), pp. 19-26, 2010.
M. Vázquez and Dervieux, A., Gradient smoothness issues in supersonic shape design. Heidelberg (Germany), 2002.
M. Orozco, Grand Challenges in Computational Biology. In and out of the grid problems. EGEE?09 Conference, 2009.
R. Sirvent, Badia, R. M., and Labarta, J., Graph-based task replication for workflow applications. In 11th IEEE International Conference on High Performance Computing and Communications, HPCC 2009, pp. 20-28, Seoul (South Korea), 2009.
S. Abadal, Alarcon, E., Lemme, M. C., Nemirovsky, M., and Cabellos-Aparicio, A., Graphene-enabled Wireless Communication for Massive Multicore Architectures, IEEE Communications Magazine . 2013.
M. Fernández, Caballero, J., Fernández, L., and et al., Graphical Representations of Protein Sequences for Alignment-Free Comparative and Predictive Studies. Recognition of Protease Inhibition Pattern from H-Depleted Molecular Graph Representat, Bioinformatics. 2010.
Í. Goiri, Le, K., Nguyen, T. D., Guitart, J., Torres, J., and Bianchini, R., GreenHadoop: leveraging green energy in data-processing frameworks, 7th ACM european conference on Computer Systems (EuroSys'12). ACM, Bern, Switzerland, pp. 57–70, 2012.
Í. Goiri, Le, K., Beauchea, R., Nguyen, T. D., Haque, M. E., Guitart, J., Torres, J., and Bianchini, R., GreenSlot: Scheduling Energy Consumption in Green Datacenters, 24th ACM/IEEE International Supercomputing Conference for High Performance Computing, Networking, Storage and Analysis (SC'11). Seattle, WA, USA, 2011.
F. Guim, Rodero, I., Corbalán, J., and Goyeneche, A., The Grid Backfilling: a Multi-Site Scheduling Architecture with Data Mining Prediction Techniques. CoreGRID Workshop in Grid Middleware 2007, 2007.
M. Vázquez and Dervieux, A., Grid Computing in Genetic Algorithms: A POD-based scheme for Aerodynamic optimization in supersonic flows. Barcelona (Spain)., 2003.
F. Guim, Goyeneche, A., Corbalán, J., Labarta, J., and Terstyansky, G., Grid computing performance prediction based in historical information. CoreGRID integration workshop. Integrated Research in Grid Computing Workshop, 2005.
R. Sirvent, GRID superscalar. Curso de Postgrado CSIC de Grids y e-Ciencia. Santander, 2007.
R. M. Badia, Labarta, J., Sirvent, R., Cela, J. M., and Grima, R., Grid superscalar: a programming paradigm for GRID applications. Workshop on Grid Applications and Programming Tools (GGF8), 2003.
R. Sirvent, Badia, R. M., Currle-Linde, N., and Resch, M., GRID superscalar and GriCoL: Integrating Different Programming Approaches, Achievements in European Research on Grid Systems, 2008.
A. Anciaux-Sedrakian, Badia, R. M., Sirvent, R., Pérez, J. M., Kielmann, T., and Merzky, A., GRID superscalar and Job Mapping on the Reliable Grid Resources, Making Grids Work, CoreGRID series, 2008.
A. Anciaux-Sedrakian, Badia, R. M., Sirvent, R., Pérez, J. M., Kielmann, T., and Merzky, A., GRID superscalar and Job Mapping on the Reliable Grid Resources. CoreGRID Workshop on Grid Programming Model Grid and P2P Systems Architecture Grid Systems, Tools and Environments, 2007.
R. Sirvent, Merzky, A., Badia, R. M., and Kielmann, T., GRID superscalar and SAGA: forming a high-level and platform-independent Grid programming environment. CoreGRID integration workshop. Integrated Research in Grid Computing, 2005.
R. Sirvent, Pérez, J. M., Badia, R. M., Lovas, R., Sipos, G., and Kacsuk, P., GRID superscalar enabled P-GRADE portal, Integrated Research in GRID Computing, 2007.
R. M. Badia, Bellens, P., de Palol, M., Ejarque, J., Labarta, J., Pérez, J. M., Sirvent, R., and Tejedor, E., GRID superscalar: from the Grid to the Cell processor. Spanish Conference on e-Science Grid Computing. Madrid (Spain), 2007.
R. Sirvent, GRID superscalar: from the Grid to the cell processor. 9th HLRS Metacomputing and Grid Workshop, 2006.
R. M. Badia, Bellens, P., Dialinos, V., Ejarque, J., Labarta, J., Pérez, J. M., and Sirvent, R., The GRID superscalar project: Current status. XVII Jornadas de Paralelismo. Albacete (Spain), 2006.
R. Sirvent, GRID superscalar y sus nuevas caracterí­sticas de tolerancia a fallos. Escuela de Verano en Computación Grid: del Middleware a las Aplicaciones. Albacete, 2007.
O. Carrillo and Orozco, M., GRID-based molecular dynamics. A Tool for genomic-scale simulations of channels in proteins. Proteins. 70, 892-899, 2008.
P. Kokkalis, Mamouri, R. E., Todua, M., Didebulidze, G. G., Papayannis, A., Amiridis, V., Basart, S., Pérez, C., and Baldasano, J. M., Ground-, satellite- and simulation-based analysis of a strong dust event over Abastumani, Georgia, during May 2009, International Journal of Remote Sensing, vol. 33, no. 16. TAYLOR & FRANCIS LTD , ENGLAND, pp. 4886 - 4901, 2012.
V. Sicardi, Ortiz, J., Rincón, A., Jorba, O., Pay, M. T., Gassó, S., and Baldasano, J. M., Ground-level ozone concentration over Spain: an application of Kalman Filter post-processing to reduce model uncertainties, Geoscientific Model Development Discussions, vol. 4. pp. 343-384, 2011.

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