Publications

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Author Title [ Type(Asc)] Year
Journal
A. Aviñó, Portella, G., Ferreira, R., Gargallo, R., Mazzini, S., Gabelica, V., Orozco, M., and Eritja, R., Specific loop modifications of the thrombin-binding aptamer trigger the formation of parallel structures., The FEBS journal. 2013.
R. M. Badia, Gannon, D., and Lee, C., Special section: Selected papers from the 7th IEEE/ACM international conference on grid computing (Grid2006). Future Generation Computer Systems, 2008.
M. T. Pay, Jiménez-Guerrero, P., Jorba, O., Basart, S., Querol, X., Pandolfi, M., and Baldasano, J. M., Spatio-temporal variability of concentrations and speciation of particulate matter across spain in the caliope modeling system, Atmospheric Environment, vol. 46, no. January 2012. PERGAMON-ELSEVIER SCIENCE LTD, ENGLAND, pp. 376-396, 2012.
X. Rubio-Campillo, Cardona, F. X. H., and Gómez, M. Yubero, The Spatiotemporal Model of an 18th-Century City Siege, Social Science Computer Review. 2014.
M. Avila, Principe, J., and Codina, R., Spatial approximation of the radiation transport equation using a subgrid-scale finite element method, Computer Methods in Applied Mechanics and Engineering, vol. 200. pp. 425-438, 2011.
M. Viana, Pérez, C., Querol, X., Alastuey, A., and Baldasano, J. M., Spatial and temporal variability ofPM levels and composition in a complex summer atmospheric scenario in Barcelona (NE Spain), Atmospheric Environment, vol. 39, no. 29. PERGAMON-ELSEVIER SCIENCE LTD, ENGLAND , pp. 5343-5361, 2005.
R. Aubry, Houzeaux, G., Vázquez, M., and Cela, J. M., Some useful strategies for unstructured edge-based solvers on shared memory machines. Int. J. Numer. Engn., 2010.
A. Bidon-Chanal, Huertas, O., Orozco, M., and Luque, F. J., Solvation enthalpies of neutral solutes in water and octanol. Theor.Chem.Acc., 123, 11-20, 2009.
A. Ramirez, Larriba-Pey, J. L., Navarro, C., Valero, M., and Torrellas, J., Software Trace Cache for Commercial Applications, International Journal of Parallel Programming, vol. 30, no. 5. pp. 373-395, 2002.
A. Ramirez, Larriba-Pey, J. L., and Valero, M., Software Trace Cache, IEEE Transactions on Computers, vol. 54, no. 1. pp. 22-35, 2005.
J. Zalamea, Llosa, J., Ayguadé, E., and Valero, M., Software and Hardware Techniques to Optimize Register File Utilization in VLIW. International Journal of Parallel Programming, 2004.
A. Morari, Boneti, C., Cazorla, F., Gioiosa, R., Cher, C. - Y., Buyuktosunoglu, A., Bose, P., and Valero, M., SMT Malleability in IBM POWER5 and POWER6 Processors, IEEE Transactions on Computers, vol. 00. 2012.
E. M. Novoa, de Pouplana, L. R., and Orozco, M., Small Molecule Docking from Theoretical Structural Models, Computational Modeling of Biological Systems Biological and Medical Physics, Biomedical Engineering. pp. 75-95 , 2012.
M. Macías and Guitart, J., SLA Negotiation and Enforcement Policies for Revenue Maximization and Client Classification in Cloud Providers, Future Generation Computer Systems, vol. 41. pp. 19–31, 2014.
I. H. Moal and Fernández-Recio, J., SKEMPI: a Structural Kinetic and Energetic database of Mutant Protein Interactions and its use in empirical models., Bioinformatics (Oxford, England), vol. 28, no. 20. pp. 2600-7, 2012.
F. M. Lucas and Guallar, V., Single vs. multiple ligand pathways in globins: A computational view., Biochimica et biophysica acta. 2013.
F. M. Lucas and Guallar, V., Single vs. multiple ligand pathways in globins: A computational view., Biochimica et biophysica acta. 2013.
E. Fadrná, Spacková, N., Sarzyñska, J., Koca, J., Orozco, M., Cheatham, T. E., and Sponer, J., Single stranded loops of quadruplex DNA as key benchmark for testing nucleic acids force fields. J. Chem. Theory Comput., 2009, 5 (9), pp 2514?2530, 2009.
S. Marras, Moragues, M., Vázquez, M., Jorba, O., and Houzeaux, G., Simulations of moist convection by a variational multiscale stabilized finite element method, Journal of Computational Physics, vol. 252. ACADEMIC PRESS INC ELSEVIER SCIENCE, UNITED STATES, pp. 195 - 218, 2013.
S. Marras, Moragues, M., Vázquez, M., Jorba, O., and Houzeaux, G., Simulations of moist convection by a variational multiscale stabilized finite element method, Journal of Computational Physics, vol. 252. pp. 195-218, 2013.
A. Rico, Cabarcas, F., Villavieja, C., Pavlovic, M., Vega, A., Etsion, Y., Ramirez, A., and Valero, M., On the Simulation of Large-scale Architectures Using Multiple Application Abstraction Levels, ACM Transactions on Architecture and Code Optimization, vol. 8. p. 36, 2012.
J. González, Giménez, J., Casas, M., Moretó, M., Ramirez, A., Labarta, J., and Valero, M., Simulating Whole Supercomputer Applications, IEEE Micro, vol. 31. IEEE, pp. 32-45, 2011.
X. Rubio-Campillo, Cela, J. M., and Hernández, F. X., Simulating archaeologists? Using agent-based modelling to improve battlefield excavations, Journal of Archaeological Science, no. 39. pp. 347-356, 2012.
B. Hernandez, Perez, H., Isaac, R., Ruiz, S., DeGyves, O., and Toledo, L., Simulating and Visualizing Real-Time Crowds on GPU Clusters, Computación y Sistemas, vol. 18. pp. 651–664, 2014.
J. R. Amores and Houzeaux, G., Simulación numérica de flujo sanguineo: una herramienta útil en cirugía vascular. Angiología, 2003.
J. Prat, Antonijuan, J., Folch, A., Sala, A., Lucchetti, A., Sardà, F., and Manuel, A., A simplified model of the interaction of the trawl warps, the otterboards and netting drag, Fisheries Research, vol. 94, no. 1. ELSEVIER SCIENCE BV, NETHERLANDS, pp. 109-117, 2008.
A. Arbona, Artigues, A., Bona-Casas, C., Massó, J., Miñano, B., Rigo, A., Trias, M., and Bona, C., Simflowny: A general-purpose platform for the management of physical models and simulation problems, Computer Physics Communications, vol. 184, no. 10. Elsevier, pp. 2321–2331, 2013.
A. Roca, HernáNdez, C., Flich, J., Silla, F., and Duato, J., Silicon-aware Distributed Switch Architecture for On-chip Networks, J. Syst. Archit., vol. 59. Elsevier North-Holland, Inc., New York, NY, USA, pp. 505–515, 2013.
L. Lin, Huhs, G., Garcia, A., and Yang, C., SIESTA-PEXSI: Massively parallel method for efficient and accurate ab initio materials simulation, Bulletin of the American Physical Society, vol. 59. APS, 2014.
L. Lin, Garcia, A., Huhs, G., and Yang, C., SIESTA-PEXSI: massively parallel method for efficient and accurate ab initio materials simulation without matrix diagonalization, Journal of Physics: Condensed Matter, vol. 26. IOP Publishing, p. 305503, 2014.
P. Nithiarasu, Zienkiewicz, O. C., Satya Sai, B. V. K., Morgan, K., Codina, R., and Vázquez, M., Shock capturing viscosities for the general fluid mechanics algorithm. Int. J. Num. Meth. Fluids, 1998.
A. Gambaruto, Janela, J., Moura, A., and Sequeira, A., Shear-thinning effects of hemodynamics in patient-specific cerebral aneurysms, MBE, vol. 10. American Institute of Mathematical Sciences (AIMS), pp. 649–665, 2013.
A. Costa, Chiodini, G., Granieri, D., Folch, A., Hankin, R., Caliro, S., Avino, R., and Cardellini, C., A shallow-layer model for heavy gas dispersion from natural sources: Application and hazard assessment at Caldara di Manziana, Italy, Geochemistry Geophysics Geosystems, vol. 9, no. Q03002. AMER GEOPHYSICAL UNION , UNITED STATES, pp. 1-13, 2008.
M. Habibian, Martínez-Montero, S., Portella, G., Chua, Z., D Bohle, S., Orozco, M., and Damha, M. J., Seven-Membered Ring Nucleoside Analogues: Stereoselective Synthesis and Studies on Their Conformational Properties., Org Lett, vol. 17, no. 21. pp. 5416-9, 2015.
F. Lordan, Tejedor, E., Ejarque, J., Rafanell, R., Álvarez, J., Marozzo, F., Lezzi, D., Sirvent, R., Talia, D., and Badia, R. M., ServiceSs: an interoperable programming framework for the Cloud, Journal of Grid Computing, vol. 12. Springer Netherlands, pp. 67-91, 2014.
J. Ejarque, Álvarez, J., Sirvent, R., and Badia, R. M., Service Orchestration on a Heterogeneous Cloud Federation, Computing and Informatics, vol. 31. pp. 45–60, 2012.
G. Katsaros, Subirats, J., Fitó, O., Guitart, J., Gilet, P., and Espling, D., A service framework for energy-aware monitoring and VM management in Clouds, Future Generation Computer Systems, vol. 29, no. 8. pp. 2077–2091, 2013.
M. Torras-Llort, Torrents, D., Soriano-Garcia, J. F., Gelpí, J. L., Estevez, R., Ferrer, R., Palacín, M., and Moreto, M., Sequential amino acid exchange across b(0,+)-like system in chicken brush border jejunum.. J Membr Biol., 2001.
I. C. G. S. Consortium and Torrents, D., Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution. Nature, 2004.
C. Marrero, Jorba, O., Cuevas, E., and Baldasano, J. M., Sensitivity study of surface wind flow of a limited area model simulating the extratropical storm Delta affecting the Canary Islands, Advances in Science and Research, vol. 2. Copernicus Publications, Germany, pp. 151-157, 2009.
A. Micsik, Ejarque, J., and Badia, R. M., A Semantic Toolkit for Scheduling in Cloud and Grid Platforms, ERCIM News 83. ERCIM, 2010.
N. Poggi, Moreno, T., Berral, J. L., Gavaldà, R., and Torres, J., Self-Adaptive Utility-Based Web Session Management.. Computer Networks Journal, 2008, 2008.
N. Poggi, Moreno, T., Berral, J. L., Gavaldà, R., and Torres, J., Self-Adaptive Utility-Based Web Session Management. Computer Networks Journal, vol 53, no. 10. 2009. pp.1712-1721. ISSN: 1389-1286, 2009.
C. Quijano, Tomancak, P., Lopez-Marti, J., Suyama, M., Bork, P., Milan, M., Torrents, D., and Manzanares, M., Selective maintenance of Drosophila tandemly-arranged duplicated genes. Genome Biology, 2008.
J. Herranz and Nin, J., Secure and efficient anonymization of distributed confidential databases, International Journal of Information Security, vol. 13. pp. 497–512, 2014.
P. Wittek and Cucchietti, F. M., A Second-Order Distributed Trotter-Suzuki Solver with a Hybrid Kernel, Computer Physics Communications, vol. 184, no. 4. Elsevier, pp. 1165-1171, 2013.
P. Wittek and Cucchietti, F. M., A Second-Order Distributed Trotter-Suzuki Solver with a Hybrid Kernel. 2012.
M. Sicard, Rocadenbosch, F., Reba, M. N. M., Comerón, A., Tomás, S., García-Vizcaino, D., Batet, O., Barrios, R., Kumar, D., and Baldasano, J. M., Seasonal variability of aerosol optical properties observed by means of a Raman lidar at an EARLINET site over Northeastern Spain, Atmospheric Chemistry and Physics, vol. 11. COPERNICUS GESELLSCHAFT MBH , GERMANY, pp. 175-190, 2011.
M. Gonçalves, Barrera-Escoda, A., Guerreiro, D., Baldasano, J. M., and Cunillera, J., Seasonal to yearly assessment of temperature and precipitation trends in the North Western Mediterranean Basin by dynamical downscaling of climate scenarios at high resolution (1971–2050), Climatic Change, vol. 122. Springer Netherlands, NETHERLANDS, pp. 243-256, 2014.
C. Pérez, Stanton, M., Diggle, P., Trzaska, S., Hugonnet, S., Miller, R., Perlwitz, J. P., Baldasano, J. M., Cuevas, E., and Thomson, M., Seasonal meningitis forecasting based on climate data in sub-Saharan Africa: the Niger case, Environmental Health Perspectives, vol. 122. US DEPT HEALTH HUMAN SCIENCES PUBLIC HEALTH SCIENCE, UNITED STATES, pp. 679–686, 2014.

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