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Houzeaux, G., de la Cruz, R., Owen, H. & Vázquez, M. Parallel uniform mesh multiplication applied to a Navier-Stokes solver. Submitted to Computers & Fluids (2011).
Osterloh, L., Pérez, C., Böhme, D., Baldasano, J.M., Böckmann, C., Schneidenbach, L. & Vicente, D. Parallel software for retrieval of aerosol distribution from LIDAR data in the framework of EARLINET-ASOS. Computer Physics Communications 180, 2095-2102 (2009).
Meenderinck, C., Azevedo, A., Juurlink, B., Álvarez, M. & Ramirez, A. Parallel Scalability of Video Decoders. Journal of Signal Processing Systems 57, 173-194 (2009).
Ferrer, R., Bellens, P., Yeom, J., Schneider, S., Koukos, K., Alvanos, M., Beltran, V., González, M., Martorell, X., Badia, R.M., Nikolopoulos, D.S., Bilas, A. & Ayguadé, E. Parallel Programming Models for Heterogeneous Multicore Architectures. (2010).
Puzyrev, V., Koldan, J., de la Puente, J., Houzeaux, G., Vázquez, M. & Cela, J.M. A parallel finite-element method for three-dimensional controlled-source electromagnetic forward modelling. Geophysical Journal International (2013).
Eguzkitza, B., Houzeaux, G., Aubry, R. & Vázquez, M. A Parallel coupling strategy for the Chimera and Domain Decomposition methods in Computational Mechanics. Computers & Fluids In Press, (2012).
Eguzkitza, B., Houzeaux, G., Aubry, R. & Vázquez, M. A Parallel coupling strategy for the Chimera and Domain Decomposition methods in Computational Mechanics. Computers & Fluids Submitted, (2011).
Avila, M., Folch, A., Houzeaux, G., Eguzkitza, B., Prieto, L. & Cabezón, D. A Parallel CFD Model for Wind Farms. Procedia Computer Science 18, 2157 - 2166 (2013).
Suyama, M., Torrents, D. & Bork, P. PAL2NAL: robust conversion of protein sequence alignments into the corresponding codon alignments. (2006).
Jiménez-Guerrero, P. & Baldasano, J.M. Ozone Response to Precursor Controls in Very Complex Terrains: the Use of Photochemical Indicators to Assess O3-NOx-VOC Sensitivity in the Northeastern Iberian Peninsula. Journal of Geophysical Research 109, 1-20 (2004).
Jorba, O., Pandolfi, M., Spada, M., Baldasano, J.M., Pey, J., Alastuey, A., Arnold, D., Sicard, M., Artiñano, B., Revuelta, M.A. & Querol, X. Overview of the meteorology and transport patterns during the DAURE field campaign and their impact to PM observations. Atmospheric Environment 77, 607 - 620 (2013).
Meléndez, A., Sallarès, V., Ranero, C.R. & Kormann, J. Origin of water layer multiple phases with anomalously high amplitude in near-seafloor wide-angle seismic recordings. Geophysical Journal International 196, 243–252 (2014).
Soteras, I., Lozano, O., Gomez-Esque, A., Escolano, C., Orozco, M., Amat, M., Bosch, J. & Luque, F.J. On the origin of the stereoselectivity in the alkylation of oxazolopiperidone enolates. (2006).at <http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=pubmed&cmd=Retrieve&dopt=AbstractPlus&list_uids=16704257&query_hl=2&itool=pubmed_DocSum>
Ferrer, R., Planas, J., Bellens, P., Duran, A., González, M., Martorell, X., Badia, R.M., Ayguadé, E. & Labarta, J. Optimizing the Exploitation of Multicore Processors and GPUs with OpenMP and OpenCL. Lecture Notes in Computer Science 6548/2011, 215-229 (2011).
Cazorla, F., Fernández, E., Ramirez, A. & Valero, M. Optimizing Long-Latency-Load-Aware Fetch Policies for SMT Processors. International Journal of High Performance Computing and Networking (IJHPCN) 2, (2004).
Amiridis, V., Wandinger, U., Marinou, E., Giannakaki, E., Tsekeri, A., Basart, S., Kazadzis, S., Gkikas, A., Taylor, M., Baldasano, J. & Ansmann, A. Optimizing CALIPSO Saharan dust retrievals. Atmospheric Chemistry and Physics 13, 12089–12106 (2013).
Dervieux, A., Vázquez, M., Hascoet, L. & Koobus, B. Optimization loops for shape and error control. (2006).
Ferrer, A.J., Hernández, F., Tordsson, J., Elmroth, E., Ali-Eldin, A., Zsigri, C., Sirvent, R., Guitart, J., Badia, R.M., Djemame, K., Ziegler, W., Dimitrakos, T., Nair, S.K., Kousiouris, G., Konstanteli, K., Varvarigou, T., Hudzia, B., Kipp, A., Wesner, S., Corrales, M., Forgó, N., Sharif, T. & Sheridan, C. OPTIMIS: A holistic approach to cloud service provisioning. Future Generation Computer Systems Vol. 28 (1), 66 - 77 (2012).
Drakakis, M., Balis, D., Amiridis, V., Kazadzis, S., Papayannis, A., Tsaknakis, G., Tzortzakis, S., Kalivitis, N., Vrekoussis, M., Kanakidou, M., Mihalopoulos, N., Chourdarkis, G., Nickovic, S., Pérez, C., Baldasano, J.M. & Drakakis, M. Optical characteristics of desert dust over the East Mediterranean during summer: a case study. Annales Geophysicae 24, 807-821 (2006).
Hanzich, M., Hernández, P., Giné, F., Solsona, F. & Lérida, J.L. On/Off-Line Prediction Applied to Job Scheduling on Non-Dedicated NOWs. Journal of Computer Science and Technology 26 (1), 99-116 (2011).
Baklanov, A., Schluenzen, K.H., Suppan, P., Baldasano, J., Brunner, D., Aksoyoglu, S., Carmichael, G., Douros, J., Flemming, J., Forkel, R., Galmarini, S., Gauss, M., Grell, G., Hirtl, M., Joffre, S., Jorba, O., Kaas, E., Kaasik, M., Kallos, G., Kong, X., Korsholm, U., Kurganskiy, A., Kushta, J., Lohmann, U., Mahura, A., Manders-Groot, A., Maurizi, A., Moussiopoulos, N., Rao, S.T., Savage, N., Seigneur, C., Sokhi, R., Solazzo, E., Solomos, S., Sørensen, B., Tsegas, G., Vignati, E., Vogel, B. & Zhang, Y. Online coupled regional meteorology-chemistry models in Europe: current status and prospects. Atmospheric Chemistry and Physics Discussions 13, 12541–12724 (2013).
Baklanov, A., Schlünzen, K., Suppan, P., Baldasano, J., Brunner, D., Aksoyoglu, S., Carmichael, G., Douros, J., Flemming, J., Forkel, R., Galmarini, S., Gauss, M., Grell, G., Hirtl, M., Joffre, S., Jorba, O., Kaas, E., Kaasik, M., Kallos, G., Kong, X., Korsholm, U., Kurganskiy, A., Kushta, J., Lohmann, U., Mahura, A., Manders-Groot, A., Maurizi, A., Moussiopoulos, N., Rao, S.T., Savage, N., Seigneur, C., Sokhi, R.S., Solazzo, E., Solomos, S., Sørensen, B., Tsegas, G., Vignati, E., Vogel, B. & Zhang, Y. Online coupled regional meteorology chemistry models in Europe: current status and prospects. Atmospheric Chemistry and Physics 14, 317–398 (2014).
Casoni, E., Peraire, J. & Huerta, A. One-dimensional shock-capturing for high-order Discontinuous Galerkin methods. International Journal of Numerical methods in Fluids 71, 737-755 (2013).
Duran, A., Ayguadé, E., Badia, R.M., Labarta, J., Martinell, L., Martorell, X. & Planas, J. OmpSs: A PROPOSAL FOR PROGRAMMING HETEROGENEOUS MULTI-CORE ARCHITECTURES. Parallel Processing Letters 21, 173-193 (2011).
Queralt, A., Artale, A., Calvanese, D. & Teniente, E. OCL-Lite: Finite reasoning on UML/OCL conceptual schemas. Data & Knowledge Engineering 73, 1-22 (2012).
Talebi, H., Samaniego, C., Samaniego, E. & Rabczuk, T. On the numerical stability and mass-lumping schemes for explicit enriched meshfree methods. IJNME (2011).
Mira, D., Jiang, X., Moulinec, C. & Emerson, D.R. Numerical simulations of turbulent jet flames with non-premixed combustion of hydrogen-enriched fuels. Computers & Fluids 88, 688 - 701 (2013).
Bonasia, R., Costa, A., Folch, A. & Macedonio, G. Numerical simulation of tephra transport and deposition of the 1982 El Chichón eruption and implications for hazard assessment. Journal of Volcanology and Geothermal Research 39-49 (2012).
Bonasia, R., Costa, A., Folch, A. & Macedonio, G. Numerical simulation of tephra transport and deposition of the 1982 El Chichón eruption and implications for hazard assessment. Journal of Volcanology and Geothermal Research 231-232, 39-49 (2012).
Doorly, D.J., Houzeaux, G., Taylor, D.J., Calmet, H. & Vázquez, M. Numerical simulation of air flow in the large airways. Submitted to Computers & Fluids (2011).
Folch, A., Martí, J., Codina, R. & Vázquez, M. A numerical model for temporal variations during explosive central-vent eruptions. (1998).
Mira, D. & Jiang, X. Numerical investigations of a hydrogen impinging flame with different finite-rate chemical kinetic mechanisms. Fuel 109, 285-296 (2013).
Mira, D., Jiang, X., Moulinec, C. & Emerson, D.R. Numerical investigation of the effects of fuel variability on the dynamics of syngas impinging jet flames. Fuel 103, 646–662 (2013).
Codina, R. & Houzeaux, G. Numerical approximation of the heat transfer between domains separated by thin walls. (2005).
Cipriano, J., Houzeaux, G., Chemisana, D., Lodi, C. & Martì-Herrero, J. Numerical analysis of the most appropriate heat transfer correlations for free ventilated double skin photovoltaic façades. Applied Thermal Engineering 57, 57-68 (2013).
Flores, O. & Orozco, M. nucleR: a package for non-parametric nucleosome positioning. Bioinformatics (Oxford, England) 27, 2149-50 (2011).
Raimondi, F., Portella, G., Orozco, M. & Fanelli, F. Nucleotide switches the information flow in Ras GTPases. (2011).
Raimondi, F., Portella, G., Orozco, M. & Fanelli, F. Nucleotide binding switches the information flow in ras GTPases. PLoS computational biology 7, e1001098 (2011).
Laughton, C. & Orozco, M. Nucleic Acid Themed Issue. Editorial. (2009).at <http://pubs.rsc.org/en/Content/ArticleLanding/2009/CP/b921472k>
Feliubadalo, L., Font, M., Purroy, J., Rousaud, F., Estivill, X., Nunes, V., Reig, N., Fernández, E., Estevez, R., Pineda, M., Torrents, D., Camps, M., Lloberas, J., Zorzano, A. & Palacín, M. Non-type I cystinuria caused by mutations in SLC7A9, encoding a subunit (bo,+AT) of rBAT. (1999).
Marti, M.A., Capece, L., Bidon-Chanal, A., Crespo, A., Guallar, V., Luque, F.J. & Estrin, D.A. Nitric oxide reactivity with globins as investigated through computer simulation. Methods in enzymology 437, 477-98 (2008).
Cossins, B.P., Jacobson, M.P. & Guallar, V. A new view of the bacterial cytosol environment. PLoS computational biology 7, e1002066 (2011).
Rueda, M., Luque, F.J. & Orozco, M. The nature of minor-groove binders-DNA complexes in the gas phase. (2005).at <http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=pubmed&cmd=Retrieve&dopt=AbstractPlus&list_uids=16104746&query_hl=2&itool=pubmed_docsum>
D'Abramo, M., Castellazzi, C.L., Orozco, M. & Amadei, A. On the nature of DNA hyperchromic effect. The journal of physical chemistry. B 117, 8697-704 (2013).
Sponer, J., Jurecka, P., Marchán, I., Luque, F.J., Orozco, M. & Hobza, P. Nature of base stacking. Reference quantum chemical stacking energies in ten unique B-DNA base pair steps. (2006).
Naganathan, A.N. & Orozco, M. The native ensemble and folding of a protein molten-globule: functional consequence of downhill folding. Journal of the American Chemical Society 133, 12154-61 (2011).
Hospital, A., Faustino, I., Collepardo-Guevara, R., González, C., Gelpí, J.L. & Orozco, M. NAFlex: a web server for the study of nucleic acid flexibility. Nucleic acids research 41, W47-55 (2013).
Radojkovic, P., Girbal, S., Grasset, A., Quiñones, E., Cazorla, F. & Yehia, S. Multithreaded COTS Processors for Time-Critical Environments . Transactions on Architecture and Code Optimization (TACO) (2012).
Jiménez-Guerrero, P., Lelieveld, J. & Baldasano, J.M. Multi-scale Modelling of air pollutants Dynamics in the North-Western Mediterranean Basin during a typical summertime episode. Journal of Geophysical Research 111, 1-21 (2006).
Ortmann, F., Roche, S., Greer, J.C., Huhs, G., Oriols, X., Shulthess, T., Deutsch, T., Weinberger, P., Payne, M., Sellier, J.M., Sprekels, J., Weinbub, J., Rupp, K., Nedjalkov, M., Vasileska, D., nito, A.E., Reggiani, L., Guerra, D., Ferry, D.K., Saraniti, M., Goodnick, S.M., Kloes, A., Colombo, L., Lilja, K., Mateos, J., Gonzalez, T., Velazquez, E., Palestri, P., Schenk, A. & Macucci, M. Multi-scale modelling for devices and circuits. E-Nano Newsletter (2012).

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