Publications

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M. Guevara, Arévalo, G., Gassó, S., Martínez, F., Soret, A., and Baldasano, J. M., Development of a spatial and temporal disaggregation methodology applied to the EMEP emission inventory, 15th GEIA Conference Emissions to Address Science & Policy Needs, vol. . ACCENT-IGAC-GEIA, 11-13 June, 2012. Toulouse. France, 2012.
K. Haustein, Development of an atmospheric modeling system for regional and global mineral dust prediction: Application to Northern Africa, Middle East and Europe, Universitat Politècnica de Catalunya, 2012.
J. M. Baldasano, Jorba, O., Pérez, C., Haustein, K., Janjic, Z., and Dabdub, D., Development of an integrated air quality modeling system for environmental applications at meso to global scales:NMMB/BSC-DUST-CHEM. ACC-CCI 2009 - Lecce (Italia), 2009.
O. Jorba, Pérez, C., Huoponen, K., Janjic, Z., and Baldasano, J. M., Development of an integrated chemical weather prediction system for environmental applications at meso to global scales: NMMB/BSC-CHEM. 9th Annual Meeting of the European Meteorological Society (EMS). Toulouse (France), 2009.
O. Jorba, Pérez, C., Haustein, K., Dabdub, D., Baldasano, J. M., Badia, A., and Spada, M., Development of an integrated chemical weather prediction system for environmental applications at meso to global scales: NMMB/BSC-CHEM, Segones Jornades de Meteorologia i Climatologia de la Mediterrania Occidental. Associacio Catalana de Meteorologia, 11-12 March. Valencia, Spain, 2010.
B. Hu, Maio, D. F., Rem, P. C., Houzeaux, G., Calmet, H., and Owen, H., Development of inverse magnetic density separation of polyolefin mixtures, Proceedings of the 26th International Conference on Solid Waste Technology and Management. Philadelphia (USA), pp. 968-976, 2011.
E. Casoni and Castro, C., Development of mathematical methods for multiphysics execution, FUSIM-E Technical Report (AIRBUS-E). FUSIM-E techical reports (AIRBUS-E), 2013.
X. Rubio-Campillo, Cela, J. M., and Hernández, F. X., The development of new infantry tactics during early XVIIIth century: a computer simulation approach to modern military history, Journal of Simulation, vol. 7. pp. 170-182, 2013.
J. M. Baldasano, Development of Sand and Dust Storm Warning System and its impacts on health decision making. 12th World Congress on Public Health. Istanbul (Turkey), 2009.
R. Parra, Jiménez-Guerrero, P., and Baldasano, J. M., Development of the high spatial resolution EMICAT2000 emission model for air pollutants from the north-eastern Iberian Peninsula (Catalonia, Spain), Environmental Pollution, vol. 140, no. 2. ELSEVIER SCI LTD, ENGLAND, pp. 200-219, 2006.
O. J. Santana, Falcón, A., Ramirez, A., and Valero, M., DIA: A Complexity-Effective Decoding Architecture, IEEE Transactions on Computers, vol. 58, no. 4. pp. 448-462, 2009.
C. Villavieja, Karakostas, V., Vilanova, L., Etsion, Y., Ramirez, A., Mendelson, A., Navarro, N., Cristal, A., and Unsal, O., DiDi: Mitigating The Performance Impact of TLB Shootdowns Using A Shared TLB Directory, Parallel Architectures and Compilation Techniques (PACT). Galveston Island, United States, 2011.
G. Huhs, Die Väter der Quantenmechanik, in Quanten, Felder, Schwarze Löcher, Verlag der Technischen Universität Graz, 2011, pp. 225–236.
T. Ramírez, Galluzzi, M., Cristal, A., and Valero, M., Different approaches using Kilo-instruction Processors, in 2005 Advanced Computer Architecture and Compilation for Embedded Systems (ACACES-2005), L'Aquila, Italy, 2005.
E. M. Jones, Monza, E., Balakrishnan, G., Blouin, G. C., Mak, P. J., Zhu, Q., Kincaid, J. R., Guallar, V., and Spiro, T. G., Differential Control of Heme Reactivity in Alpha and Beta Subunits of Hemoglobin: A Combined Raman Spectroscopic and Computational Study, Journal of the American Chemical Society. p. null, 2014.
J. Watts, Martín-Pintado, N., Gómez-Pinto, I., Schwartzentruber, J., Portella, G., Orozco, M., González, C., and Dhama, M., Differential stability of 2′F-ANA?RNA and ANA?RNA hybrid duplexes: roles of structure, pseudohydrogen bonding, hydration, ion uptake and flexibility. Nucl. Acids Res. (2010) 38 (7): 2498-2511, 2009.
J. Alonso, Guitart, J., and Torres, J., Differentiated Quality of Service for e-Commerce Applications through Connection Scheduling based on System-Level Thread Priorities, 15th Euromicro Conference on Parallel, Distributed and Network-based Processing (PDP'07). Naples, Italy, pp. 72-76, 2007.
R. M. Badia, Labarta, J., Giménez, J., and Escalé, F., Dimemas: Predicting MPI applications behaviour in Grid environments. Workshop on Grid Applications and Programming Tools (GGF8), 2003.
A. Pérez Foguet and Casoni, E., Dimensionless Analysis of HSDM and Application to Simulation of Breakthrough Curves of Highly Adsorbent Porous Media, Journal of Environmental Engineering, vol. 135, no. 5. pp. 667–676, 2013.
J. Labarta, Girona, S., Pillet, V., Cortes, T., and Gregoris, L., DiP : A Parallel Program Development Environment. 2nd International EuroPar Conference (EuroPar 96), 1996.
M. A. Ramírez, Cristal, A., Villa, L. A., Veidenbaum, A., and Valero, M., Direct Instruction Wakeup for OOO processors, in Innovative Architecture for Future Generation High-Performance Processors and System, Maui, Hawaii, United States, 2004.
P. Lensing, Cortes, T., and Brinkmann, A., Direct Lookup and Hash-Based Metadata Placement for Local File Systems, 6th Internationa System and Storage Conference (Systor 2013) . 2013.
A. Cuervo, Dans, P. D., Carrascosa, J. L., Orozco, M., Gomila, G., and Fumagalli, L., Direct measurement of the dielectric polarization properties of DNA., Proc Natl Acad Sci U S A, vol. 111, no. 35. pp. E3624-30, 2014.
S. Rao, Raj, S., Cossins, B., Marro, M., Guallar, V., and Petrov, D., Direct observation of single DNA structural alterations at low forces with surface-enhanced Raman scattering., Biophysical journal, vol. 104, no. 1. pp. 156-62, 2013.
G. Houzeaux and Codina, R., A Dirichlet/Neumann Domain Decomposition Method for Incompressible Turbulent Flows on Overlapping Subdomains. Computers & Fluids, 2004.
J. L. Gelpi, DISCRETE – a novel package for the simulation of protein dynamics using the Discrete Molecular Dynamics method, High Performance Computing in Computational Chemistry and Molecular Biology: Challenges and Solutions provided by ScalaLife project. 2012.
P. Sfriso, Emperador, A., Gelpí, J. Lluis, and Orozco, M., Discrete Molecular Dynamics, in Computational Approaches to Protein Dynamics: From Quantum to Coarse-Grained Methods, CRC Press, 2014, pp. 339-356.
C. Curutchet, Orozco, M., Luque, F. J., Mennucci, B., and Tomasi, J., Dispersion and repulsion contributions to the solvation free energy: Comparison of quantum mechanical and classical approaches in the polarizable continuum model.. J. Comput. Chem., 2006.
C. Perfumo, Sönmez, N., Unsal, O., Cristal, A., Harris, T., and Valero, M., Dissecting Transactional Executions in Haskell, in The Second ACM SIGPLAN Workshop on Transactional Computing (TRANSACT 2007), Portland, OR, United States, 2007.
R. Soliva, Gelpí, J. L., Almansa, C., Virgili, M., and Orozco, M., Dissection of the recognition properties of p38 MAP Kinase. Determination of the binding mode of a new pyridinyl-heterocycle inhibitor family. J.Med.Chem. 50, 283-29, 2007.
E. Terradellas, Camino, C., Alonso-Pérez, S., Basart, S., Baldasano, J. M., and Cuevas, E., Distribución espacial y temporal de polvo mineral atmosférico en el norte de África y Oriente medio estimada a partir de la visibilidad horizontal, XXXII Jornadas Científicas Asociación Meteorológica Española “Meteorología y Calidad del Aire”, vol. . Asociación Meteorológica Española (AME), 28-30 May, 2012. Alcobendas, Madrid. Spain, pp. 1-8, 2012.
J. L. Berral, Alonso, J., Poggi, N., Gavaldà, R., Parashar, M., and Torres, J., Distributed Learning Mechanism Against Flooding Network Attacks. XIX Jornadas de Paralelismo, Castelló, Spain, 17-19 of September, 2008., 2008.
I. González, Galluzzi, M., Veidenbaum, A., Ramírez, M. A., Cristal, A., and Valero, M., A distributed processor state management architecture for large-window processors, in 41st Annual IEEE/ACM International Symposium on Microarchitecture (MICRO-41), Lake Como, Italy, 2008, pp. 11–22.
I. González, Galluzzi, M., Veidenbaum, A., Ramírez, M. A., Cristal, A., and Valero, M., A Distributed Processor State Management Architecture for Large-Window Processors. Departament d'Arquitectura de Computadors, Universitat Politècnica de Catalunya, 2008.
I. González, Galluzzi, M., Veidenbaum, A., Ramirez, A., Cristal, A., and Valero, M., A distributed processor state management architecture for large-window processors, in 41st Annual IEEE/ACM International Symposium on Microarchitecture (MICRO-41), Lake Como, Italy, 2008, pp. 11–22.
J. L. González and Cortes, T., Distributing Orthogonal Redundancy on Adaptive Disk Arrays. International Conference on Grid computing, high-performAnce and Distributed Applications (GADA'08), 2008.
N. Vujic, González, M., Ayguadé, E., Martorell, X., Ramirez, A., and Cabarcas, F., DMA++: On the Fly Data Realignment for On-Chip Memories, 16th IEEE International Symposium on High-Performance Computer Architecture. Bangalore (India), 2010.
N. Vujic, Cabarcas, F., González, M., Ramirez, A., Martorell, X., and Ayguadé, E., DMA++: On the Fly Data Realignment for On-Chip Memories, Computers, IEEE Transactions on, vol. 61. pp. 237 -250, 2012.
N. Vujic, Álvarez, L., González, M., Martorell, X., and Ayguadé, E., DMA-circular: an enhanced high level programmable DMA controller for optimized management of on-chip local memories, Proceedings of the 9th conference on Computing Frontiers. ACM, New York, NY, USA, pp. 113–122, 2012.
M. Orozco, DNA from atoms to genomics. Biomolecular Simulations, 2009.
M. Orozco, DNA from quantum chemistry to genomics. Beckman seminary, 2008.
DNA from the electron to the chromatinVIII, Biogune Anniversary Distinguished Lecture. 2013.
M. Orozco, "DNA from the electron to the chromatinVIII", Biogune Anniversary Distinguished Lecture. 2013.
L. W. Hillier, The DNA sequence of human chromosome 7. Nature, 2003.
M. Orozco, “DNA simulation in the postgenomic era”. Plenary lecture. Department of Pharmacy. North Caroline State University. 2013.
I. Faustino, Curutchet, C., Luque, J. F., and Orozco, M., The DNA-forming properties of 6-selenoguanine., Physical chemistry chemical physics : PCCP, vol. 16, no. 3. pp. 1101-10, 2014.
J. R. Goñi, Fenollosa, C., Pérez, A., Torrents, D., and Orozco, M., DNAlive: A tool for the physical analysis of DNA at the genomic scale. Bioinformatics, 95, 1731-1732, 2008.
J. R. Goñi, Fenollosa, C., Pérez, A., Torrents, D., and Orozco, M., DNAlive: a tool for the physical analysis of DNA at the genomic scale.. Bioinformatics. 24(15):1731-2. Epub 2008 Jun 9., 2008.
B. Otero, Cela, J. M., Badia, R. M., and Labarta, J., A Domain Decomposition Strategy for GRID Environments. EuroPVM/MPI 2004, 2004.
D. Alonso, Dorronsoro, I., Rubio, L., Muñoz, P., García-Palomero, E., Del Monte, M., Bidon-Chanal, A., Orozco, M., Luque, F. J., Castro, A., Medina, M., and Martínez, A., Donepezil-Tacrine hybrid related derivatives as new dual binding site inhibitors of AchE. Bioorg. Med. Chem., 2005.

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