Publications

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Meyer, T., de la Cruz, X. & Orozco, M. An atomistic view to the gas phase proteome. (2009). at <http://www.cell.com/structure/abstract/S0969-2126(08)00430-9>
Barbany, M. et al. Characterization of the impact of alternative splicing on protein dynamics: the cases of glutathione S-transferase and ectodysplasin-A isoforms. Proteins 80, 2235-49 (2012).
Rueda, M. et al. A consensous view to Protein Dynamics. (2007).
Noy, A. et al. Datamining of molecular dynamics trajectories of nucleic acids. (2006).
Meyer, T. et al. Essential Dyanmics: A Tool for Efficient Trajectory Compression and Management. (2006).
Candotti, M. et al. Exploring early stages of the chemical unfolding of proteins at the proteome scale. PLoS computational biology 9, e1003393 (2013).
Talavera, D. et al. A fast method for the determination of fractional contributions to solvation in proteins. (2006). at <http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=pubmed&cmd=Retrieve&dopt=AbstractPlus&list_uids=17001031&query_hl=9&itool=pubmed_DocSum>
Utz, N., Meyer, T., Rink, G., Orozco, M. & Koslowski, T. Geometry, Dynamics, and Electronic Structure of DNA–Carbon Nanotube Hybrids. J. Phys. Chem. C 116 (20), pp 11278–11282, (2012).
Morreale, A. et al. Linear response theory: an alternative to PB and GB methods for the analysis of molecular dynamics trajectories?. (2004). at <http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15382247&query_hl=1&itool=pubmed_DocSum>
Meyer, T. et al. MoDEL (Molecular Dynamics Extended Library): a database of atomistic molecular dynamics trajectories. Structure (London, England : 1993) 18, 1399-409 (2010).
Meyer, T. et al. MoDEL (Molecular Dynamics Extended Library). A database of atomistic molecular dynamics simulations. (2010). at <http://www.cell.com/structure/abstract/S0969-2126(10)00353-9>
Morreale, A. et al. Partition of protein solvation into group contributions from molecular dynamics simulations. (2005). at <http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15517587&query_hl=1&itool=pubmed_DocSum>
Emperador, A., Meyer, T. & Orozco, M. Protein flexibility from discrete molecular dynamics simulations using quasi-physical potentials. (2009). at <http://onlinelibrary.wiley.com/doi/10.1002/prot.22563/abstract>
Meyer, T., Gabelica, V., Grubmüller, H. & Orozco, M. Proteins in the gas phase. (2013).
Emperador, A., Meyer, T. & Orozco, M. United-atom discrete molecular dynamics of proteins using physics-based potentials. (2008). at <http://pubs.acs.org/doi/abs/10.1021/ct8003832>
D'Abramo, M., Meyer, T., Bernadó, P., Fernández-Recio, J. & Orozco, M. On the use of low resolution data to improve structure predictions of proteins and protein complexes. (2009). at <http://pubs.acs.org/doi/abs/10.1021/ct900305m>