Publications

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T. Meyer, de la Cruz, X., and Orozco, M., An atomistic view to the gas phase proteome. Structure, 17, 88-95, 2009.
M. Barbany, Morata, J., Meyer, T., Lois, S., Orozco, M., and de la Cruz, X., Characterization of the impact of alternative splicing on protein dynamics: the cases of glutathione S-transferase and ectodysplasin-A isoforms., Proteins, vol. 80, no. 9. pp. 2235-49, 2012.
M. Rueda, Ferrer, C., Meyer, T., Pérez, A., Camps, J., Hospital, A., Gelpí, J. L., and Orozco, M., A consensous view to Protein Dynamics. Proc. Natl. Acad. Sci. USA, 2007.
A. Noy, Meyer, T., Rueda, M., Ferrer, C., Valencia, A., Pérez, A., de la Cruz, X., López-Bes, J. M., Luque, F. J., and Orozco, M., Datamining of molecular dynamics trajectories of nucleic acids. J.Biomol.Struct.Dynam, 2006.
T. Meyer, Ferrer-Costa, C., Pérez, A., Rueda, M., Bidon-Chanal, A., Luque, F. J., Laughton, C., and Orozco, M., Essential Dyanmics: A Tool for Efficient Trajectory Compression and Management. J.Chem.Theor.Comput, 2006.
M. Candotti, Pérez, A., Ferrer-Costa, C., Rueda, M., Meyer, T., Gelpí, J. L., and Orozco, M., Exploring early stages of the chemical unfolding of proteins at the proteome scale., PLoS computational biology, vol. 9, no. 12. p. e1003393, 2013.
D. Talavera, Morreale, A., Hospital, A., Ferrer-Costa, C., Gelpí, J. L., de la Cruz, X., Meyer, T., Soliva, R., Luque, F. J., and Orozco, M., A fast method for the determination of fractional contributions to solvation in proteins. Protein Science, 2006.
N. Utz, Meyer, T., Rink, G., Orozco, M., and Koslowski, T., Geometry, Dynamics, and Electronic Structure of DNA–Carbon Nanotube Hybrids, J. Phys. Chem. C, vol. 116 (20), pp 11278–11282. 2012.
A. Morreale, de la Cruz, X., Meyer, T., Gelpí, J. L., Luque, F. J., and Orozco, M., Linear response theory: an alternative to PB and GB methods for the analysis of molecular dynamics trajectories?. Proteins, 2004.
T. Meyer, D'Abramo, M., Hospital, A., Rueda, M., Ferrer-Costa, C., Pérez, A., Carrillo, O., Camps, J., Fenollosa, C., Repchevsky, D., Gelpí, J. L., and Orozco, M., MoDEL (Molecular Dynamics Extended Library): a database of atomistic molecular dynamics trajectories., Structure (London, England : 1993), vol. 18, no. 11. pp. 1399-409, 2010.
T. Meyer, D'Abramo, M., Hospital, A., Rueda, M., Ferrer-Costa, C., Pérez, A., Carrillo, O., Fenollosa, C., Perchevsky, D., Gelpí, J. L., and Orozco, M., MoDEL (Molecular Dynamics Extended Library). A database of atomistic molecular dynamics simulations. Structure. (2010), 18, 1399-1409., 2010.
A. Morreale, de la Cruz, X., Meyer, T., Gelpí, J. L., Luque, F. J., and Orozco, M., Partition of protein solvation into group contributions from molecular dynamics simulations. Proteins, 2005.
A. Emperador, Meyer, T., and Orozco, M., Protein flexibility from discrete molecular dynamics simulations using quasi-physical potentials. Proteins, 78, 83-94, 2009.
T. Meyer, Gabelica, V., Grubmüller, H., and Orozco, M., Proteins in the gas phase. WIRES Comput.Mol.Sci, 2013.
A. Emperador, Meyer, T., and Orozco, M., United-atom discrete molecular dynamics of proteins using physics-based potentials. J. Chem. Theory Comput., 2008, 4 (12), pp 2001?2010, 2008.
M. D'Abramo, Meyer, T., Bernadó, P., Fernández-Recio, J., and Orozco, M., On the use of low resolution data to improve structure predictions of proteins and protein complexes. J. Chem. Theory Comput., 2009, 5 (11), pp 3129?3137, 2009.