Publications

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Author Title Type [ Year(Asc)]
2013
O. Peredo, Adjoint-based PDE-constrained optimization using HPC techniques, 2013.
C. Cugnasco, Hernandez, R., Becerra, Y., Torres, J., and Ayguadé, E., Aeneas: A Tool to Enable Applications to Effectively Use Non-Relational Databases, 2013 International Conference on Computational Science. Elsevier, Barcelona, Spain, pp. 2561–2564, 2013.
C. Montañola-Sales, Casanovas-García, J., Cela, J. M., Onggo, B. S. S., and Kaplan-Marcusan, A., Agent-Based Simulation of Large Population Dynamics, European Conference on Complex Systems. Complex Systems Society, Barcelona, Spain, 2013.
J. M. Baldasano, Air Quality Forecasting Systems: Needs of Computational Resources and Database, International Computing for the Atmospheric Sciences Symposium 2013 , vol. . National Science Foundation, 8-12 September, 2013. Annecy (France) , 2013.
J. M. Baldasano, Air Quality Modelling. Evaluation and post-processing techniques, ITaRS (Initial Training for atmospheric Remote Sensing) Start-up workshop, vol. . ITARS, 13-15 February, 2013. Athens, Greece, 2013.
J. Koldan, Puzyrev, V., and Cela, J. M., Algebraic Multigrid Preconditioner for Numerical Finite-Element Solutions of Electromagnetic Induction Problems, SIAM Conference on Mathematical and Computational Issues in the Geosciences, Padova, Italy. 2013.
J. Koldan, Puzyrev, V., and Cela, J. M., Algebraic Multigrid Preconditioning for Finite-element Methods for 3-D Electromagnetic Modelling in Geophysics, 75th EAGE Conference & Exhibition. 2013.
R. de la Cruz and Araya-Polo, M., Algorithm 942: Semi-stencil, ACM Transactions On Mathematical Software, vol. 40, no. 3. ACM, 2013.
L. B. Sucar, Algoritmos paralelos para la detección y corrección de ruido impulsivo y ruido gaussiano basados en lógica fuzzy. RUA. Repositorio Institucional de la Universidad de Alicante, Alicante, 2013.
J. Perello, Spadaro, S., Ricciardi, S., Careglio, D., Peng, S., Nejabati, R., Zervas, G., Simeonidou, D., Predieri, A., Biancani, M., Dorren, H. S., Lucente, S., Luo, J., Calabretta, N., Bernini, G., Ciulli, N., Sancho, J. C., Iordache, S., Farreras, M., Becerra, Y., Liou, C., Hussain, I., Yin, Y., Liu, L., and Proietti, R., All-optical packet/circuit switching-based data center network for enhanced scalability, latency, and throughput, Network, IEEE, vol. 27. pp. 14-22, 2013.
A. P. Fernandes, Ferreira, J., Miranda, A. I., Baldasano, J. M., and Tchepel, O., Análise de episódios de poeiras utilizando a modelação da qualidade do ar e dados de satélite, 10º CNA-12ª CNEA: 10ª Conferência Nacional do Ambiente- 12ª Congresso Nacional de Engenharia do Ambiente, vol. . Departamento de Ambiente e Ordenamento da Universidade de Aveiro and Faculdade de Ciências e Tecnologia da Universidade Nova de Lisboa, 6-8 November, 2013. Aveiro, Portugal, 2013.
O. Tchepel, Ferreira, J., Fernandes, A. P., Basart, S., Baldasano, J. M., and Borrego, C., Analysis of long-range transport of aerosols for Portugal using 3D Chemical Transport Model and satellite measurements, Atmospheric Environment, vol. 64, no. January 2013. PERGAMON-ELSEVIER SCIENCE LTD, ENGLAN, pp. 229-241, 2013.
F. Y. Ahmadabadi, Jiménez, D., Álvarez, C., Etsion, Y., and Badia, R. M., Analysis of the Task Superscalar Architecture Hardware Design, 2013 International Conference on Computational Science. Elsevier, Barcelona, Spain, pp. 339–348, 2013.
B. Maric, Abella, J., and Valero, M., APPLE: Adaptive Performance-Predictable Low-Energy Caches for Reliable Hybrid Voltage Operation, 50th Annual Design Automation Conference (DAC). ACM, Austin (Texas), United States, pp. 1–6, 2013.
A. Tsekeri, Amiridis, V., Kokkalis, P., Basart, S., Chaikovsky, A., Dubovik, O., Mamouri, R. E., Papayannis, A., and Baldasano, J. M., Application of a Synergetic Lidar and Sunphotometer Algorithm for the Characterization of a Dust Event over Athens, Greece, British Journal of Environment & Climate Change, vol. 3, no. 4. pp. 531-546, 2013.
J. González, Application of clustering analysis and sequence analysis on the performance analysis of parallel applications, Universitat Politecnica de Catalunya (UPC), 2013.
J. M. Baldasano, AQFS: Sistemas de Pronóstico de la Calidad del Aire. Funciones y Requerimientos, Seminaio de Reducción de Gases de Efecto Invernadero, vol. . Instituto Nacional de Investigaciones Nucleares (ININ), 13 November, 2013. Toluca (México), 2013.
M. Ripepe, Bonadonna, C., Folch, A., Delle Donne, D., Lacanna, G., and Höskuldsson, A., Ash-Plume Dynamics and Eruption Source Parameters by Infrasound and 8 Thermal Imagery: the 2010 Eyjafjallajökull Eruption, Earth and Planetary Science Letters, vol. 336. pp. 112-121, 2013.
G. Rull, Farré, C., Queralt, A., Teniente, E., and Urpí, T., AuRUS: explaining the validation of UML/OCL conceptual schemas, Software & Systems Modeling. Springer-Verlag, pp. 1-28, 2013.
C. Farré, Queralt, A., Rull, G., Teniente, E., and Urpí, T., Automated reasoning on UML conceptual schemas with derived information and queries, Information & Software Technology, vol. 55. pp. 1529-1550, 2013.
C. González, Ishikawa, H., Hayashi, A., Jiménez, D., Álvarez, C., Kimura, K., and Kasahara, H., Automatic Design Exploration Framework for Multicores with Reconfigurable Accelerators, WRC 2013 : 7th HiPEAC Workshop on Reconfigurable Computing. Berlin, Germany, pp. 1–10, 2013.
N. Martin-Pintado, Deleavey, G. F., Portella, G., Campos-Olivas, R., Orozco, M., Damha, M. J., and González, C., Backbone FCH⋅⋅⋅O Hydrogen Bonds in 2'F-Substituted Nucleic Acids., Angewandte Chemie (International ed. in English). 2013.
E. Artiaga, Cortes, T., and Martí, J., Better Cloud Storage Usability Through Name Space Virtualization, 6th IEEE/ACM Utility and Cloud computing conference. IEEE Computer Society, Dresden, Germany, 2013.
M. Rueda, Orozco, M., Totrov, M., and Abagyan, R., BioSuper: a web tool for the superimposition of biomolecules and assemblies with rotational symmetry., BMC structural biology, vol. 13. p. 32, 2013.
L. Kosmidis, Abella, J., Quiñones, E., and Cazorla, F. J., A Cache Design for Probabilistically Analysable Real-Time Systems, ACM/IEEE Design, Automation, and Test in Europe (DATE). ACM, IEEE, Grenoble, France, pp. 513–518, 2013.
J. M. Baldasano, CALIOPE-AQFS como instrumento de planificación. Análisis de casos, vol. . Universidad Internacional Menendez Pelayo, 25-26 Junio, 2013. Santander (España) , 2013.
E. Gracia, Farré, D., Cortés, A., Ferrer-Costa, C., Orozco, M., Mallol, J., Lluís, C., Canela, E. I., McCormick, P. J., Franco, R., Fanelli, F., and Casadó, V., The catalytic site structural gate of adenosine deaminase allosterically modulates ligand binding to adenosine receptors., FASEB journal : official publication of the Federation of American Societies for Experimental Biology, vol. 27, no. 3. pp. 1048-61, 2013.
G. P. Gobbi, Angelini, F., Barnaba, F., Costabile, F., Baldasano, J. M., Basart, S., Sozzi, R., and Bolignano, A., Changes in particulate matter physical properties during Saharan advections over Rome (Italy): a four-year study, 2001–2004, Atmospheric Chemistry and Physics, vol. 13, no. August. COPERNICUS GESELLSCHAFT MBH, GERMANY, pp. 7395–7404, 2013.
G. P. Gobbi, Angelini, F., Barnaba, F., Costabile, F., Baldasano, J. M., Basart, S., Sozzi, R., and Bolignano, A., Changes in particulate matter physical properties during Saharan advections over Rome (Italy): a four-year study, 2001–2004, Atmospheric Chemistry and Physics Discussions, vol. 13. Copernicus Publications, Germany, pp. 4963–4988, 2013.
G. Houzeaux, Owen, H., Eguzkitza, B., Samaniego, C., de la Cruz, R., Calmet, H., Vázquez, M., and Avila, M., Chapter 8: A Parallel Incompressible Navier-Stokes Solver: Implementation Issues, in Developments in Parallel, Distributed, Grid and Cloud Computing for Engineering, vol. 31, Saxe-Coburg Publications, 2013, pp. Pages 171-201.
R. Agius, Torchala, M., Moal, I. H., Fernández-Recio, J., and Bates, P. A., Characterizing changes in the rate of protein-protein dissociation upon interface mutation using hotspot energy and organization., PLoS computational biology, vol. 9, no. 9. p. e1003216, 2013.
A. Seyedi, Yalcin, G., Unsal, O., and Cristal, A., Circuit Design of a Novel Adaptable and Reliable L1 Data Cache, 23rd ACM international conference on Great lakes symposium on VLSI. Paris, France, 2013.
J. M. Baldasano, Climate Change and its realtion with ecosystems in the Central America & Caribbean context, EUCARINET/ENLACE Europe, Central America&Caribbean: Climate Change and Biodiversity Dialogue Workshop, vol. . ENLACE and EUCARINET, 22-23 April, 2013. Ciudad de Panamá (Panamá) , 2013.
E. Sánchez, Kleiber, R., Hatzky, R., Borchardt, M., Monreal, P., Castejón, F., López-Fraguas, A., Sáez, X., Velasco, J. L., Calvo, I., Alonso, A., and López-Bruna, D., Collisionless damping of flows in the TJ-II stellarator, Plasma Physics and Controlled Fusion, vol. 55. p. 014015, 2013.
R. Moretti, Fleishman, S. J., Agius, R., Torchala, M., Bates, P. A., Kastritis, P. L., Rodrigues, J. P. G. L. M., Trellet, M., Bonvin, A. M. J. J., Cui, M., Rooman, M., Gillis, D., Dehouck, Y., Moal, I., Romero-Durana, M., Perez-Cano, L., Pallara, C., Jimenez, B., Fernández-Recio, J., Flores, S., Pacella, M., Praneeth Kilambi, K., Gray, J. J., Popov, P., Grudinin, S., Esquivel-Rodríguez, J., Kihara, D., Zhao, N., Korkin, D., Zhu, X., Demerdash, O. N. A., Mitchell, J. C., Kanamori, E., Tsuchiya, Y., Nakamura, H., Lee, H., Park, H., Seok, C., Sarmiento, J., Liang, S., Teraguchi, S., Standley, D. M., Shimoyama, H., Terashi, G., Takeda-Shitaka, M., Iwadate, M., Umeyama, H., Beglov, D., Hall, D. R., Kozakov, D., Vajda, S., Pierce, B. G., Hwang, H., Vreven, T., Weng, Z., Huang, Y., Li, H., Yang, X., Ji, X., Liu, S., Xiao, Y., Zacharias, M., Qin, S., Zhou, H. - X., Huang, S. - Y., Zou, X., Velankar, S., Janin, J., Wodak, S. J., and Baker, D., Community-wide evaluation of methods for predicting the effect of mutations on protein-protein interactions., Proteins, vol. 81, no. 11. pp. 1980-7, 2013.
F. Spyrakis, Lucas, F., Bidon-Chanal, A., Viappiani, C., Guallar, V., and Luque, J. F., Comparative analysis of inner cavities and ligand migration in non-symbiotic AHb1 and AHb2., Biochimica et biophysica acta. 2013.
J. Ferreira, Guevara, M., Baldasano, J. M., Tchepel, O., Schaap, M., Miranda, A. I., and Borrego, C., A comparative analysis of two highly spatially resolved European atmospheric emission inventories, Atmospheric Environment, vol. 75, no. August. PERGAMON-ELSEVIER SCIENCE LTD, ENGLAND, pp. 43 - 57, 2013.
I. Tanasic, Vilanova, L., Jorda, M., Cabezas, J., Gelado, I., Navarro, N., and Hwu, W. -meiW., Comparison Based Sorting for Systems with Multiple GPUs, GPGPU-6 - Six Workshop on General Purpose Processing Using GPUs. Houston, TX, United States, 2013.
R. E. Mamouri, Nisantzi, A., Hadjimitsis, D. G., Ansmann, A., Schwarz, A., Basart, S., and Baldasano, J. M., Complex Vertical Layering and Mixing of Aerosol over the Eastern Mediterranean: Active and passive remote sensing at the Cyprus University of Technology, First International Conference on Remote Sensing and Geoinformation of Environment RSCy 2013, vol. . European Space Agency and Cyprus University of Technology, 8-10 April 2013. Paphos, Cyprus, 2013.
R. E. Mamouri, Nisantzi, A., Hadjimitsis, D. G., Ansmann, A., Schwarz, A., Basart, S., and Baldasano, J. M., Complex Vertical Layering and Mixing of Aerosol over the Eastern Mediterranean: Active and passive remote sensing at the Cyprus University of Technology, in Proc. SPIE 8795, First International Conference on Remote Sensing and Geoinformation of the Environment (RSCy2013), vol. 8795, 5 August 2013. Paphos, Cypurs: SPIE Digital Library, 2013.
B. Islam, Sgobba, M., Laughton, C., Orozco, M., Sponer, J., Neidle, S., and Haider, S., Conformational dynamics of the human propeller telomeric DNA quadruplex on a microsecond time scale., Nucleic acids research, vol. 41, no. 4. pp. 2723-35, 2013.
A. N. Naganathan and Orozco, M., The conformational landscape of an intrinsically disordered DNA-binding domain of a transcription regulator., The journal of physical chemistry. B, vol. 117, no. 44. pp. 13842-50, 2013.
L. Pérez-Cano, Eliahoo, E., Lasker, K., Wolfson, H. J., Glaser, F., Manor, H., Bernadó, P., and Fernández-Recio, J., Conformational transitions in human translin enable nucleic acid binding., Nucleic acids research, vol. 41, no. 21. pp. 9956-66, 2013.
M. Jamroz, Orozco, M., Kolinski, A., and Kmiecik, S., Consistent View of Protein Fluctuations from All-Atom Molecular Dynamics and Coarse-Grained Dynamics with Knowledge-Based Force-Field. JCT, 2013.
S. Girbal, Moretó, M., Grasset, A., Abella, J., Quiñones, E., Cazorla, F. J., and Yehia, S., On the Convergence of Mainstream and Mission Critical Markets, 50th Annual Design Automation Conference (DAC). ACM, Austin (Texas), United States, pp. 1–10, 2013.
R. Bertran, González, M., Martorell, X., Navarro, N., and Ayguadé, E., Counter-Based Power Modeling Methods: Top-Down vs. Bottom-Up, Computer Journal, vol. 56. pp. 198–213, 2013.
T. Nakashima, Tsubokura, M., Vázquez, M., Owen, H., and Doi, Y., Coupled analysis of unsteady aerodynamics and vehicle motion of a road vehicle in windy conditions, Computers & Fluids, vol. 80. pp. 1 - 9, 2013.
H. Owen, Houzeaux, G., Vázquez, M., Samaniego, C., and Calmet, H., Coupling free surface turbulent fluid flow and rigid body motion with the Parallel Finite Element code Alya. 2013.
L. Velasco, Asensio, A., Castro, A., Berral, J. L., Carrera, D., Lopez, V., and Fernandez-Palacios, J. P., Cross-Stratum Orchestration and Flexgrid Optical Networks for Data Center Federations, IEEE Network, vol. 7. pp. 23–30, 2013.
M. Orozco, Data deluge in genomics”. Roche-Instituto Principe Felipe meeting on “Sequencing in the clinical practices”. 2013.

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