Publications

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Author Title Type [ Year(Asc)]
2013
Terradellas, E. et al. Evaluation of atmospheric dust prediction models using ground-based observations. European Geosciences Union (EGU) General Assembly 2013. Geophysical Research Abstracts 15, (2013).
Baldasano, J. M., Pay, M. T., Arévalo, G. & Gassó, S. Evaluation of Chemical Initial and Boundary on Ozone Concentrations in the Spanish CALIOPE AQFS. 5th International Workshop on Air Quality Forecasting Research (IWAQFR) (2013).
Aguilera, I. et al. Evaluation of the CALIOPE air quality forecasting system for epidemiological research: The example of NO2 in the province of Girona (Spain). Atmospheric Environment 72, 134 - 141 (2013).
Aguilera, I. et al. Evaluation of the CALIOPE air quality forecasting system for epidemiological research: the example of NO2 in the province of Girona, Spain. 2013 conference Environment and Health—Bridging South, North, East and West. Conference of ISEE, ISES and ISIAQ (2013).
Baldasano, J. M., Pay, M. T., Arévalo, G. & Gassó, S. Evaluation the CALIOPE Air Quality Forecast System for Year 2011. 4th International Meeting on Meteorology and Climatology of the Mediterranean (4th IMMCM) (2013).
Reyes-García, V. et al. Evidence of traditional knowledge loss among a contemporary indigenous society. Evolution & Human Behavior 34, 249-257 (2013).
Orozco, M. “Expanding the frontiers of molecular dynamics simulations of DNA”. CECAM Conference. University of Vienna. (2013).
Pallara, C. et al. Expanding the frontiers of protein-protein modeling: from docking and scoring to binding affinity predictions and other challenges. Proteins 81, 2192-200 (2013).
Rajovic, N. et al. Experiences With Mobile Processors for Energy Efficient HPC. ACM/IEEE Design, Automation, and Test in Europe (DATE) 464–468 (2013).
Sfriso, P., Hospital, A., Emperador, A. & Orozco, M. Exploration of conformational transition pathways from coarse-grained simulations. Bioinformatics (Oxford, England) 29, 1980-6 (2013).
Candotti, M. et al. Exploring early stages of the chemical unfolding of proteins at the proteome scale. PLoS computational biology 9, e1003393 (2013).
Lopez-Blanco, J. R. et al. Exploring large macromolecular functional motions on clusters of multicore processors. Journal of Computational Physics 246, 275–288 (2013).
Orozco, M. “Exploring protein flexibility”. Plenary Lecture. Cambridge University. (2013).
Naboni, E., Zhang, Y., Maccarini, A., Hirsch, E. & Lezzi, D. Extending the use of parametric simulation in practice through a cloud based online service. 1st IBPSA-Italy Conference: BSA2013 Building Simulation Applications Conference 105–112 (2013).
Strassburg, J. & Alexandrov, V. Facilitating Analysis of Monte Carlo Dense Matrix Inversion Algorithm Scaling Behaviour through Simulation. Journal of Computational Science (2013).
Luque, C., Moreto, M., Cazorla, F. J. & Valero, M. Fair CPU Time Accounting in CMP+SMT Processors. ACM Trans. Archit. Code Optim. 9, 50:1–50:25 (2013).
Yalcin, G., Unsal, O. & Cristal, A. Fault Tolerance for Multi-Threaded Applications by Leveraging Hardware Transactional Memory. 10th conference on ACM Computing Frontiers 4–4 (2013).
Yalcin, G., Unsal, O. & Cristal, A. FaulTM: Error Detection and Recovery Using Hardware Transactional Memory. ACM/IEEE Design, Automation, and Test in Europe (DATE) (2013).
Miki, Y. et al. Formation of a tyrosine adduct involved in lignin degradation by Trametopsis cervina lignin peroxidase: a novel peroxidase activation mechanism. The Biochemical journal 452, 575-84 (2013).
Ahmadabadi, F. Y., Jiménez, D., Álvarez, C., Etsion, Y. & Badia, R. M. FPGA-Based Prototype of the Task Superscalar Architecture. WRC 2013 : 7th HiPEAC Workshop on Reconfigurable Computing 1–10 (2013). at <http://hpc.ac.upc.edu/PDFs/dir21/file004313.pdf>
Servat, H., Llort, G., Huck, K., Giménez, J. & Labarta, J. Framework for a Productive Performance Optimization. Parallel Computing Systems and Applications 39, 336-353 (2013).
Terrazas, M., Alagia, A., Faustino, I., Orozco, M. & Eritja, R. Functionalization of the 3'-ends of DNA and RNA strands with N-ethyl-N-coupled nucleosides: a promising approach to avoid 3'-exonuclease-catalyzed hydrolysis of therapeutic oligonucleotides. Chembiochem : a European journal of chemical biology 14, 510-20 (2013).
Marinescu, M. - C. & Sánchez, C. Fusing statecharts and java. ACM Trans. Embed. Comput. Syst. 12, 45:1–45:21 (2013).
King, M., Khan, A., Agarwal, A., Arcas, O. & Arvind,. Generating Infrastructure for FPGA-Accelerated Applications. 23rd International Conference on Field Programmable Logic and Applications 1–6 (2013).
Julià, A. et al. A genome-wide association study on a southern European population identifies a new Crohn's disease susceptibility locus at RBX1-EP300. Gut (2013). doi:10.1136/gutjnl-2012-302865
Julià, A. et al. A genome-wide association study on a southern European population identifies a new Crohn's disease susceptibility locus at RBX1-EP300. Gut (2013). doi:10.1136/gutjnl-2012-302865
de la Puente, J., Ferrer, M. & Cela, J. M. Geological Complexity, Topography and Seismic Wave Modelling: Are Finite-Differences Up to the Challenge?. SIAM Conference on Mathematical and Computational Issues in the Geosciences, Padova, Italy (2013).
Scaini, C., Bolic, T., Castelli, L. & Folch, A. A GIS-based tool for the estimation of impacts of volcanic ash dispersal on European air traffic. Proceedings of the 3rd SESAR Innovation Days (2013).
Eguzkitza, B. & Houzeaux, G. A Gluing Method for Non-Matching Meshes. (2013).
Abadal, S., Alarcon, E., Lemme, M. C., Nemirovsky, M. & Cabellos-Aparicio, A. Graphene-enabled Wireless Communication for Massive Multicore Architectures. IEEE Communications Magazine (2013).
Paolieri, M. et al. A Hard Real-time Capable Multi-core SMT Processor. ACM Trans. Embed. Comput. Syst. 12, 79:1–79:26 (2013).
Cook, H. et al. A hardware evaluation of cache partitioning to improve utilization and energy-efficiency while preserving responsiveness. Proceedings of the 40th Annual International Symposium on Computer Architecture 308–319 (2013). doi:10.1145/2485922.2485949
Liu, Q. et al. Hardware Support for Accurate Per-task Energy Metering in Multicore Systems. ACM Trans. Archit. Code Optim. 10, 34:1–34:27 (2013).
Alvarez, L. et al. Hardware-Software Coherence Protocol for the Coexistence of Caches and Local Memories. IEEE Transactions on Computers 99, 1 (2013).
Armejach, A. et al. HARP: Adaptive Abort Recurrence Prediction for Hardware Transactional Memory. IEEE Conference on High Performance Computing (HiPC 2013) (2013).
Filgueras, A. et al. Heterog eneous tasking on SMP/FPGA SoCs: the case of OmpSs and the Zynq. workshop @VLSI-SOC: W1A (Special Session 2): Are processors the NAND gats of the future? (2013). at <http://ieeexplore.ieee.org/xpl/abstractAuthors.jsp?tp=&arnumber=6673293&url=http%3A%2F%2Fieeexplore.ieee.org%2Fxpls%2Fabs_all.jsp%3Farnumber%3D6673293>
Filgueras, A. et al. Heterogeneous tasking on SMP/FPGA SoCs: the case of OmpSs and the Zynq. 21st IFIP/IEEE International Conference on Very Large Scale Integration (VLSI-SoC) 290–291 (2013).
Loridan, T. et al. High Resolution Simulation of the Variability of Surface Energy Balance Fluxes Across Central London with Urban Zones for Energy Partitioning. Boundary-Layer Meteorology 1-31 (2013).
de la Puente, J., Castillo, J. E. & Cela, J. M. High-Order Mimetic Modelling of 3D Surface Waves. SIAM Annual Meeting, San Diego, USA (2013).
Hospital, A. & Gelpi, J. L. High‐throughput molecular dynamics simulations: toward a dynamic view of macromolecular structure. Wiley Interdisciplinary Reviews: Computational Molecular Science (2013). doi:10.1002/wcms.1142
Baldasano, J. M. HPC in Environmental Issues. H2020: Challenges and opportunities for HPC, RISC Workshop (2013).
Arís, R., Vázquez, M., Aguado-Sierra, J., Rivero, M. & Houzeaux, G. HPC techniques in Cardiac Modeling. (2013).
Yazdanpanah, F., Alvarez-Martinez, C., Jiménez-González, D. & Etsion, Y. Hybrid Dataflow/Von-Neumann Architectures. IEEE Transactions on Parallel and Distributed Systems 99, 1 (2013).
Alexandrov, V. & Strassburg, J. Hybrid Scalable Monte Carlo Methods for Approximate Matrix Inversion. "Hybrid Scalable Monte Carlo Methods for Approximate Matrix Inversion" submitted to 9th IMACS Seminar on Monte Carlo Methods 2013 (2013).
Subotic, V., Sancho, J. C., Labarta, J. & Valero, M. Identifying Critical Code Sections in Dataflow Programming Models. Parallel, Distributed and Network-Based Processing (PDP), 2013 21st Euromicro International Conference on 29-37 (2013). doi:10.1109/PDP.2013.15
Ritter, M., Müller, M. D., Jorba, O., Parlow, E. & Liu, L. - J. S. Impact of chemical and meteorological boundary and initial conditions on air quality modeling: WRF-Chem sensitivity evaluation for a European domain. Meteorology and Atmospheric Physics 119, 59-70 (2013).
Menut, L. et al. Impact of surface roughness and soil texture on mineral dust emission fluxes modeling. Journal of Geophysical Research: Atmospheres 118, 6505–6520 (2013).
Cresti, A. et al. Impact of Vacancies on Diffusive and Pseudodiffusive Electronic Transport in Graphene. Crystals 3, 289–305 (2013).
Bueno-Hedo, J., Badia, R. M., Martorell, X., Ayguadé, E. & Labarta, J. Implementing OmpSs Support for Regions of Data in Architectures with Multiple Address Spaces. 27th International Conference on Supercomputing (ICS) 359–368 (2013).
Sazeides, Y. et al. Implicit-Storing and Redundant-Encoding-of-Attribute Information in Error-Correction-Codes. 46th IEEE/ACM International Symposium on Microarchitecture (MICRO) 160–171 (2013). doi:10.1145/2540708.2540723

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