Publications

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2005
Badia, R.M., Beckmann, O., Bubak, M., Caromel, D., Getov, V., Isaiadis, S., Lazarov, V., Malawski, M., Panagiotidi, S. & Thiyagalingam, J. Lightweight Grid Platform: Design Methodology. (2005).
Pérez, C., Nickovic, S., Sicard, M., Rocadenbosch, F., Toledano, C., Cachorro, V.E. & Baldasano, J.M. A long Saharan dust event over the Western Mediterranean: LIDAR, sun photometer and DREAM model simulations. (2005).
Mir, S., Cazorla, F., Ramirez, A. & Valero, M. Metrics for the Evaluation of SMT Processors Performance. XVI Jornadas de Paralelismo (2005).
Jiménez-Guerrero, P., Arévalo, G. & Baldasano, J.M. Modeling of gaseous photochemical pollution and particulate matter in the Western Mediterranean Basin (Spanish Levantine coast) by using high-resolution. (2005).
Jiménez-Guerrero, P., Parra, R., Gassó, S. & Baldasano, J.M. Modeling the Ozone Weekend Effect in very Complex Terrains: a Case Study in the Northeastern Iberian Peninsula. Atmospheric Environment 39, 429-444 (2005).
Muñoz-Muriedas, J., Perspicace, S., Bech, N., Guccione, S., Orozco, M. & Luque, F.J. Molecular Alignment Based on Hydrophobic Similarity as a Tool in Drug Design. (2005).
Gelpí, J.L. Molecular Dynamics Extended Library. (2005).at <http://mmb.pcb.ub.es/MODEL>
Song, Y., Guallar, V. & Baker, N.A. Molecular dynamics simulations of salicylate effects on the micro- and mesoscopic properties of a dipalmitoylphosphatidylcholine bilayer. Biochemistry 44, 13425-38 (2005).
Curutchet, C., Bidon-Chanal, A., Soteras, I., Orozco, M. & Luque, F.J. MST continuum study of the hydration free energies of monovalent ionic species. (2005).at <http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=pubmed&cmd=Retrieve&dopt=AbstractPlus&list_uids=16851394&query_hl=1&itool=pubmed_DocSum>
Santana, O.J., Ramirez, A. & Valero, M. Multiple Stream Prediction. ISHPC. International Symposium on High Performance Computers (2005).
Rueda, M., Luque, F.J. & Orozco, M. The nature of minor-groove binders-DNA complexes in the gas phase. (2005).at <http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=pubmed&cmd=Retrieve&dopt=AbstractPlus&list_uids=16104746&query_hl=2&itool=pubmed_docsum>
Ramírez, M.A., Cristal, A., Valero, M., Veidenbaum, A. & Villa, L.A. A New Pointer-based Instruction Queue Design and Its Power-Performance Evaluation. IEEE International Conference on Computer Design (ICCD-2005) 647–653 (2005).
Codina, R. & Houzeaux, G. Numerical approximation of the heat transfer between domains separated by thin walls. (2005).
Almasi, G., Archer, C., Erway, C.C., Heidelberger, P., Martorell, X., Moreira, J., Steinmacher-Burow, B.D. & Zheng, Y. Optimization of MPI Collective Communication on Blue Gene/L Systems. (2005).
Ródenas, D., Martorell, X., Ayguadé, E., Labarta, J., Almasi, G., Cascaval, C., Castaños, J. & Moreira, J. Optimizing NANOS OpenMP for the IBM Cyclops Multithreaded Architecture. (2005).
Pericàs, M., González, R., Cristal, A. & Valero, M. Overcoming the Memor Wall with D-KIPs. 2005 Advanced Computer Architecture and Compilation for Embedded Systems (ACACES-2005) 99–102 (2005).
Sánchez, F., Salami, E., Ramirez, A. & Valero, M. Parallel Processing in Biological Sequence Comparison using General Purpose Processors. 2005 IEEE International Symposium on Workload Characterization (IISWC-2005) (2005).
Salami, E., Ramirez, A., Sánchez, F. & Valero, M. Parallel Processing in Sequence Matching. ACACES 2005, Poster Abstracts. Advanced Computer Architecture and Compilation for Embedded Systems (2005).
Morreale, A., de la Cruz, X., Meyer, T., Gelpí, J.L., Luque, F.J. & Orozco, M. Partition of protein solvation into group contributions from molecular dynamics simulations. (2005).at <http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15517587&query_hl=1&itool=pubmed_DocSum>
Otero, B., Cela, J.M., Badia, R.M. & Labarta, J. Performance Analysis of Domain Decomposition Applications Using Unbalanced Strategies in Grid Environments. (2005).
Holanda, R., Verdú, J., García, J. & Valero, M. Performance Analysis of New Packet Trace Compression TCP Flow Clustering. (2005).
Álvarez, M., Salami, E., Ramirez, A. & Valero, M. A Performance Characterization of High Definition Digital Video Decoding Using H.264/AVC. 2005 IEEE International Symposium on Workload Characterization (IISWC-2005) 24-33 (2005).
Álvarez, M., Salami, E., Ramirez, A. & Valero, M. A Performance Evaluation of High Definition Digital Video Decoding Using the H.264/AVC Standard. ACACES 2005, Poster Abstracts. Advanced Computer Architecture and Compilation for Embedded Systems 255-258 (2005).
Badia, R.M., Bubak, M., Funika, W. & Smetek, M. Performance monitoring of GRID superscalar applications with OCM-G. (2005).
Corbalán, J., Martorell, X. & Labarta, J. Performance-Driven Processor Allocation. (2005).
Ferrer-Costa, C., Gelpí, J.L., Zamakola, L., Parrága, I., de la Cruz, X. & Orozco, M. PMUT: A Web-based tool for the annotation of pathological mutations on proteins. (2005).at <http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15879453&query_hl=1&itool=pubmed_DocSum>
Pericas, M., Ayguadé, E., Zalamea, J., Llosa, J. & Valero, M. Power and Performace Evaluation of Widened and Clustered VLIW Cores. (2005).
Santana, O.J., Ramirez, A. & Valero, M. Predicting two Streams per Cycle. XVI Jornadas de Paralelismo 3-10 (2005).
Zdobnov, E.M., Campillos, M., Harrington, E.D., Torrents, D. & Bork, P. Protein coding potential of retroviruses and other transposable elements in vertebrate genomes. (2005).
Conde, L., Vaquerizas, J.M., Ferrer-Costa, C., de la Cruz, X., Orozco, M. & Dopazo, J. PupasView: A visual tool for selecting suitable SNPs with putative pathological effects in genes for geotyping purporses. (2005).
Cazorla, F., Knijnenburg, P., Sakellarious, R., Fernández, E., Ramirez, A. & Valero, M. Quality of service for Simultaneous Multithreading Processors. ACACES 2005, Poster Abstracts. Advanced Computer Architecture and Compilation for Embedded Systems 67-70 (2005).
Baldasano, J.M., Gonçalves, M. & Jiménez-Guerrero, P. A Review of background Air Quality trends in Europe using EMEP data. (2005).
Baldasano, J.M., Gonçalves, M. & Jiménez-Guerrero, P. A review of background air quality trends in Europe using EMEP data. (2005).
Ródenas, D., Martorell, X., Costa, J., Cortes, T. & Labarta, J. Running BT Multi-Zone on non-shared memory machines with OpenMP SDSM instead of MPI. (2005).
Pérez, C., Nickovic, S., Sicard, M., Toledano, C., Cachorro, V.E. & Baldasano, J.M. Saharan dust events over the Iberian Peninsula: LIDAR and sun photometer measurements. (2005).
Gelpí, J.L., Martínez, A., Alonso, A., Castro, A., Dorronsoro, I., Luque, F.J., Pérez, C. & Moreno, F.J. SAR and 3D-QSAR Studies on thiadiaolidinones (TDZDs) derivatives: Esploration of structural requeriments as glycogen synthase kinase 3 (GSK-3) inhibitors. (2005).at <http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16279768&query_hl=1&itool=pubmed_DocSum>
Sánchez, F., Álvarez, M., Salami, E., Ramirez, A. & Valero, M. On the Scalability of 1- and 2-Dimensional SIMD Extensions for Multimedia Applications. 2005 IEEE International Symposium on Performance Analysis of Systems and Software (ISPASS-2005) 167-176 (2005).at <http://www.bsc.es/media/404.pdf>
Labarta, J., Giménez, J., Martínez, E., González, P., Servat, H., Llort, G. & Aguilar, X. Scalability of Tracing and Visualization Tools. (2005).
Guitart, J., Beltran, V., Carrera, D., Torres, J. & Ayguadé, E. Session-Based Adaptative Overload Control for Secure Dynamic Web Application. 34th International Conference on Parallel Processing (ICPP-05) 341-349 (2005).doi:http://dx.doi.org/10.1109/ICPP.2005.72
Nou, R., Guitart, J., Beltran, V., Carrera, D., Montero, L., Torres, J. & Ayguadé, E. Simulating complex systems with a low-detail model. XVI Jornadas de Paralelismo 301-308 (2005).at <http://www.bsc.es/media/383.pdf>
Hansen, M., Ballester, F., Querol, X., Sunyer, J., Medina, S. & Baldasano, J.M. Situación actual, Prioridades de actuación y Necesidades de Investigación en Contaminación Atmosférica y Salud en España. (2005).
Hansen, M., Ballester, F., Querol, X., Sunyer, J., Medina, S. & Baldasano, J.M. Situación actual, Prioridades de actuación y Necesidades de Investigación en Contaminación Atmosférica y Salud en España. (2005).
Ramirez, A., Larriba-Pey, J.L. & Valero, M. Software Trace Cache. IEEE Transactions on Computers 54, 22-35 (2005).
Rodero, I., Corbalán, J., Duran, A. & Labarta, J. Soporte para el análisis de workloads en el proyecto eNANOS. (2005).
Viana, M., Pérez, C., Querol, X., Alastuey, A. & Baldasano, J.M. Spatial and temporal variability ofPM levels and composition in a complex summer atmospheric scenario in Barcelona (NE Spain). Atmospheric Environment 39, 5343-5361 (2005).
Pajuelo, A., González, A. & Valero, M. Speculative Execution for Hiding Memory Latency. (2005).
Verdú, J., Nemirovsky, M., García, J. & Valero, M. Te Impact of Traffic Aggregation on the Memory Performance of Networking Applications. (2005).
Crespo, A., Martí, M., Kalko, S.G., Morreale, A., Orozco, M., Gelpí, J.L., Luque, F.J. & Estrín, D.A. Theoretical study of the truncated hemoglobin HbN: Exploring the molecular basis of the NO detoxification mechanism. (2005).at <http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15783226&query_hl=1&itool=pubmed_DocSum>
García, A., Medina, P., Fernández, E., Santana, O.J., Cristal, A. & Valero, M. Towards the Loop Processor Architecture. XVI Jornadas de Paralelismo (2005).
Guitart, J., Carrera, D., Torres, J., Ayguadé, E. & Labarta, J. Tuning Dynamic Web Applications using Fine-Grain Analysis. 13th Euromicro Conference on Parallel, Distributed and Network-based Processing (PDP'05) 84-91 (2005).doi:http://dx.doi.org/10.1109/EMPDP.2005.44

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