Publications

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2006
González, I., Santana, O.J., Pajuelo, A. & Valero, M. A First Glance at the Implementation of Precise Recoveries in Out-of-order Commit Processors. (2006).
Kishcha, P., Alpert, P., Shtivelman, A., Krichak, S.O., Joseph, J.H., Kallos, G., Katsafados, P., Spyrou, C., Gobbi, G.P., Barnaba, F., Nickovic, S., Pérez, C. & Baldasano, J.M. Forecast errors in dust vertical distributions over Rome. (2006).
Rueda, M., Luque, F.J. & Orozco, M. G-DNA can maintain its structure in the gas phase. (2006).
Sirvent, R. GRID superscalar: from the Grid to the cell processor. (2006).
Badia, R.M., Bellens, P., Dialinos, V., Ejarque, J., Labarta, J., Pérez, J.M. & Sirvent, R. The GRID superscalar project: Current status. (2006).
Martín, F. Grupo de Trabajo sobre Modelización de la Calidad del Aire: Resumen y conclusiones más relevantes. (2006).
Baldasano, J.M., Jiménez-Guerrero, P., Jorba, O., Parra, R., Arévalo, G., López, E., Pérez, C., Gassó, S., Gonçalves, M., Gracia, P., Benoiston, E., Monroy, O. & Passola, O. High-Resolution Air Quality Modelling in the Iberian Peninsula: Applications and Developments in a Supercomputing Framework. (2006).
Jiménez-Guerrero, P., Jorba, O., Pérez, C. & Baldasano, J.M. High-Resolution Annual-Cycle Simulations of Aerosols in the Western Mediterranean in a Supercomputing Framework. (2006).
Jiménez-Guerrero, P., Jorba, O., Pérez, C., Gonçalves, M. & Baldasano, J.M. High-resolution modelling of atmospheric pollution by aerosols in the Iberian Peninsula: annual cycle simulations. (2006).
Rodero, I., Guim, F., Corbalán, J. & Labarta, J. How the JSDL can Exploit the Parallelism?. (2006).
Small, Y.A., Guallar, V., Soudackov, A.V. & Hammes-Schiffer, S. Hydrogen bonding pathways in human dihydroorotate dehydrogenase. The journal of physical chemistry. B 110, 19704-10 (2006).
Muñoz-Muriedas, J., Barril, X., López, J.M., Orozco, M. & Luque, F.J. A hydrophobic similarity analysis of solvation effects on nucleic acids. (2006).
Suyama, M., Harrington, E.D., Bork, P. & Torrents, D. Identification and analysis of genes and pseudogenes within duplicated regions in the human and mouse genomes. (2006).
Pérez, C., Nickovic, S., Pejanovic, G., Özsoy, E. & Baldasano, J.M. Impact of Saharan dust on numerical weather forecasts. (2006).
Baldasano, J.M. Impact of the Kyoto protocol on the electricity suply industry in Europe: the Spanish example. (2006).
González, I., Santana, O.J., Pajuelo, A. & Valero, M. Implementando recuperaciones precisas en procesadores con consolidación fuera de orden. (2006).
Codina, R. & Houzeaux, G. Implementation Aspects of Coupled Problems in CFD involving time. (2006).
Boneti, C., Cazorla, F. & Valero, M. Improving EDF for SMT processors. (2006).
Pérez, J.M., Badia, R.M. & Labarta, J. Including SMP in Grids as execution platform and other extensions in GRID superscalar. (2006).
Pérez, C., Jiménez-Guerrero, P., Jorba, O., Sicard, M. & Baldasano, J.M. Influence of the PBL scheme on high-resolution photochemical simulations in an urban coastal area over the Western Mediterranean. Atmospheric Environment 40, 5274-5297 (2006).
Pérez, C., Nickovic, S., Pejanovic, G., Özsoy, E. & Baldasano, J.M. Interactive dust-radiation modeling: a step to improve weather forecasts. (2006).
Pérez, C., Nickovic, S., Pejanovic, G., Baldasano, J.M. & Özsoy, E. Interactive dust-radiation modeling: a step to improve weather forecasts. Journal of Geophysical Research, , 111, 1-17 (2006).
Baldasano, J.M. Inventario de emisiones de España para modelizar la calidad del aire con un alto nivel de desagregación. (2006).
Cristal, A. Kilo Instruction Processors. (2006).
Valero, M. Kilo-instruction Processors: Overcoming the Memory Wall. (2006).
Ramírez, T., Cristal, A., Santana, O.J., Pajuelo, A. & Valero, M. Kilo-Instruction Processors, RunAhead and Prefetch. ACM International Conference on Computing Frontiers (CF 2006) (2006).at <http://capinfo.e.ac.upc.edu/PDFs/dir05/file003137.pdf>
Ramírez, T., Pajuelo, M., Santana, O.J. & Valero, M. Kilo-instruction Processors, Runahead and Prefetching. (2006).
Bidon-Chanal, A., Martí, M., Crespo, A., Milani, M., Orozco, M., Bolognesi, M., Luque, F.J. & Estrín, D.A. Ligand-induced dynamical regulation of NO conversion in Mycobacterium Tubercolisis truncated-hemoglobin-N. (2006).at <http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=pubmed&cmd=Retrieve&dopt=AbstractPlus&list_uids=16688782&query_hl=1&itool=pubmed_docsum>
Huertas, O., Poater, J., Fuentes-Cabrera, M., Orozco, M., Sola, M. & Luque, F.J. Local aromaticity in natural nucleobases and their size-expanded benzo-fused derivatives. (2006).
Pérez, C., Nickovic, S., Baldasano, J.M., Sicard, M., Rocadenbosch, F. & Cachorro, V.E. A long Saharan dust event over the Western Mediterranean: lidar, sun photometer observations and regional dust modeling. Journal of Geophysical Research 111, 1-16 (2006).
Vera, J., Cazorla, F., Pajuelo, A., Santana, O.J., Fernández, E. & Valero, M. Looking for novel ways to obtain fair measurements in multithreaded architectures. (2006).
Vázquez, M., Dervieux, A. & Koobus, B. A methodology for the shape optimization of flexible wings. (2006).
Alastruey, J.J., Monreal, T., Viñals, V. & Valero, M. Microarchitectural Support for Speculative Register Renaming. (2006).
Sicard, M., Pérez, C., Rocadenbosch, F., Baldasano, J.M. & García-Vizcaino, D. Mixed layer depth determination in the Barcelona costal area from regular lidar measurements: methods, results and limitations. Boundary-Layer Meteorology 119, 135-157 (2006).
Guallar, V., Jarzecki, A.A., Friesner, R.A. & Spiro, T.G. Modeling of ligation-induced helix/loop displacements in myoglobin: toward an understanding of hemoglobin allostery. Journal of the American Chemical Society 128, 5427-35 (2006).
Jiménez-Guerrero, P., Jorba, O. & Baldasano, J.M. Modeling the dynamics of air pollutants over the iberian peninsula under typical meteorological situations. (2006).
Baldasano, J.M. Modelización del ciclo atmosférico del polvo mineral desértico y su influencia en la meteorología y la calidad del aire. (2006).
Cabarcas, F., Rico, A., Ródenas, D., Martorell, X., Ramirez, A. & Ayguadé, E. A module based Cell processor simulator. 2006 Advanced Computer Architecture and Compilation for Embedded Systems (ACACES-06) (2006).
Nou, R., Julià, F., Carrera, D., Hogan, K., Caubet, J.J., Labarta, J. & Torres, J. Monitoring and analyzing a Grid Middleware Node. (2006).
Jiménez-Guerrero, P., Lelieveld, J. & Baldasano, J.M. Multi-scale Modelling of air pollutants Dynamics in the North-Western Mediterranean Basin during a typical summertime episode. Journal of Geophysical Research 111, 1-21 (2006).
Sponer, J., Jurecka, P., Marchán, I., Luque, F.J., Orozco, M. & Hobza, P. Nature of base stacking. Reference quantum chemical stacking energies in ten unique B-DNA base pair steps. (2006).
Vera, J., Cazorla, F., Pajuelo, A., Santana, O.J., Fernández, E. & Valero, M. A Novel Evaluation Methodology to Obtain Fair Measurements in Multithreaded Architectures. (2006).
Rosolen, A.M., Ordas, S., Vázquez, M. & Frangi, A.F. Numerical schemes for the simulation of three-dimensional cardiac electrical propagation in patient-specific ventricular geometries. (2006).
Drakakis, M., Balis, D., Amiridis, V., Kazadzis, S., Papayannis, A., Tsaknakis, G., Tzortzakis, S., Kalivitis, N., Vrekoussis, M., Kanakidou, M., Mihalopoulos, N., Chourdarkis, G., Nickovic, S., Pérez, C., Baldasano, J.M. & Drakakis, M. Optical characteristics of desert dust over the East Mediterranean during summer: a case study. Annales Geophysicae 24, 807-821 (2006).
Dervieux, A., Vázquez, M., Hascoet, L. & Koobus, B. Optimization loops for shape and error control. (2006).
Soteras, I., Lozano, O., Gomez-Esque, A., Escolano, C., Orozco, M., Amat, M., Bosch, J. & Luque, F.J. On the origin of the stereoselectivity in the alkylation of oxazolopiperidone enolates. (2006).at <http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=pubmed&cmd=Retrieve&dopt=AbstractPlus&list_uids=16704257&query_hl=2&itool=pubmed_DocSum>
Suyama, M., Torrents, D. & Bork, P. PAL2NAL: robust conversion of protein sequence alignments into the corresponding codon alignments. (2006).
Sánchez, F., Salami, E., Ramirez, A. & Valero, M. Performance Analysis of Sequence Alignment Applications. IISWC, IEEE Internacional Symposium on Workload Characterization (2006).
Carrera, D., Guitart, J., Beltran, V., Torres, J. & Ayguadé, E. Performance Impact of the Grid Middleware. Engineering the Grid: Status and Perspective 235-249 (2006).
Morad, T., Weiser, U., Kolodny, A., Valero, M. & Ayguadé, E. Performance, Power Efficiency and Scalability of Asymmetric Cluster Chip Multiprocessors. (2006).

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