Publications

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Author Title Type [ Year(Asc)]
2012
A. Jokanovic, Sancho, J. C., Labarta, J., Rodriguez, G., and Minkenberg, C., Effective Quality-of-Service Policy for Capacity High-Performance Computing Systems, High Performance Computing and Communication 2012 IEEE 9th International Conference on Embedded Software and Systems (HPCC-ICESS), 2012 IEEE 14th International Conference on. pp. 598-607, 2012.
J. M. Baldasano, El transporte de contaminantes en el área de Barcelona, Observatori Fabra, vol. . 11 July, 2012. Barcelona. Spain, 2012.
EMBO Workshop in Computational biology (http://events.embo.org/12-comp-bio/), 2012. 2012.
A. Soret and Baldasano, J. M., Emissions de GEH, previsions del Pla de l’Energia i Canvi Climàtic de Catalunya 2012-2020, Reunió Grup d’Experts en Canvi Climàtic a Catalunya (GECCC), vol. . GECCC, 28-29 June, 2012. Monestir de les Avellanes, Spain, 2012.
A. Vaqué, Goiri, Í., Guitart, J., and Torres, J., EMOTIVE Cloud: The BSC's IaaS Open Source Solution for Cloud Computing, in Open Source Cloud Computing Systems: Practices and Paradigms, IGI Global, 2012, pp. 44-60.
C. Camino, Alonso-Pérez, S., Terradellas, E., Rodríguez, S., Gómez-Peláez, A. J., Romero-Campos, P. M., Hernández, Y., Basart, S., Baldasano, J. M., and Cuevas, E., An Empirical Relationship to Estimate Mineral Dust Concentration from Visibility Observations, European Aerosol Conference 2012 (EAC-2012), vol. . European Aerosol Assembly (EAA), 2-7 September, 2012. Granada. Spain, 2012.
F. Marozzo, Lordan, F., Rafanell, R., Lezzi, D., Talia, D., and Badia, R. M., Enabling Cloud Interoperability with COMPSs, Euro-Par 2012 Parallel Processing, vol. 7484. Springer Berlin / Heidelberg, pp. 16-27, 2012.
D. Lezzi, Rafanell, R., Carrión, A., Blanquer Espert, I., Hernández, V., and Badia, R. M., Enabling e-Science Applications on the Cloud with COMPSs, Euro-Par 2011: Parallel Processing Workshops, vol. 7155. Springer Berlin / Heidelberg, pp. 25-34, 2012.
R. Bertran, Becerra, Y., Carrera, D., n, V. Ã. § B., González, M., Martorell, X., Navarro, N., Torres, J., and Ayguadé, E., Energy accounting for shared virtualized environments under DVFS using PMC-based power models, Future Generation Computer Systems, vol. 28. Elsevier, pp. 457 - 468, 2012.
D. Göddeke, Komatitsch, D., Geveler, M., Ribbrock, D., Rajovic, N., Puzovic, N., and Ramirez, A., Energy efficiency vs. performance of the numerical solution of PDEs: An application study on a low-power ARM-based cluster, Journal of Computational Physics, vol. 237. p. 132--150, 2012.
Í. Goiri, Berral, J. L., Fitó, O., Julià, F., Nou, R., Guitart, J., Gavaldà, R., and Torres, J., Energy-efficient and Multifaceted Resource Management for Profit-driven Virtualized Data Centers, Future Generation Computer Systems, vol. 28, no. 5. pp. 718-731, 2012.
T. Cortes, EOFS Exascale IO workgroup status, 11th HLRS/hww Workshop on Scalable Global Parallel File Systems - Total Cost of Dataship. 2012.
M. Kulis, Heath, S., Bibikova, M., Queirós, A. C., Navarro, A., Clot, G., Martínez-Trillos, A., Castellano, G., Brun-Heath, I., Pinyol, M., Barberán-Soler, S., Papasaikas, P., Jares, P., Beà, S., Rico, D., Ecker, S., Rubio, M., Royo, R., Ho, V., Klotzle, B., Hernández, L., Conde, L., López-Guerra, M., Colomer, D., Villamor, N., Aymerich, M., Rozman, M., Bayés, M., Gut, M., Gelpí, J. L., Orozco, M., Fan, J. - B., Quesada, V., Puente, X. S., Pisano, D. G., Valencia, A., López-Guillermo, A., Gut, I., López-Otín, C., Campo, E., and Martín-Subero, J. I., Epigenomic analysis detects widespread gene-body DNA hypomethylation in chronic lymphocytic leukemia., Nature genetics, vol. 44, no. 11. pp. 1236-42, 2012.
O. Taboureau, Baell, J. B., Fernández-Recio, J., and Villoutreix, B. O., Established and emerging trends in computational drug discovery in the structural genomics era., Chemistry & biology, vol. 19, no. 1. pp. 29-41, 2012.
M. Gonçalves, Barrera-Escoda, A., Baldasano, J. M., and Cunillera, J., Estudi de regionalització climàtica dinàmica a alta resolució sobre Catalunya, Reunió Grup d’Experts en Canvi Climàtic a Catalunya (GECCC), vol. . GECCC, 28-29 June, 2012. Monestir de les Avellanes, Spain, 2012.
A. Morari, Gioiosa, R., Wisniewski, R. W., Rosenburg, B., Inglett, T., and Valero, M., Evaluating the impact of tlb misses on future HPC systems, The 26th IEEE International Parallel and Distributed Processing Symposium (IPDPS 2012). IEEE, Shanghai, China, 2012.
A. Tsekeri, Amiridis, V., Kokkalis, P., Basart, S., Chaikovsky, A., Dubovik, O., Mamouri, R. E., Baldasano, J. M., and Papayannis, A., Evaluation of dust modelling using a synergetic algorithm of lidar and sunphotometer data, 26th International Laser Radar Conference (ILRC 26), vol. . International Coordination group for Laser Atmospheric Studies, 25-29 June, 2012. Porto Heli. Greece, 2012.
J. M. Baldasano, Pay, M. T., Arévalo, G., and Gassó, S., Evaluation of the Air Quality Forecast System CALIOPE in spain for 2011, 4th International Workshop on Air Quality Forecasting Research (IWAQFR), vol. . Air Resources Laboratory of NOAA and World Meteorological Organization (WMO), 12-14 December, 2012. Geneva, Switzerland, 2012.
M. T. Pay, Gassó, S., and Baldasano, J. M., Evaluation of the CMAQ5.0 in the framework of the CALIOPE air quality forecasting system, 24th ACCENT/GLOREAM Workshop, vol. . Barcelona Supercomputing Center – Centro Nacional de Supercomputación , 17-19 October, 2012. Barcelona, Spain, 2012.
M. T. Pay, Baldasano, J. M., and Gassó, S., Evaluation of the CMAQ5.0 in the framework of the CALIOPE air quality forecasting system over Europe, 10th Annual CMAS Conference, vol. . US-EPA/CMAS, October 15-17, 2012. Chapel Hill, NC (USA), pp. 1-6, 2012.
A. Badia and Jorba, O., Evaluation of the gas-phase results of the online NMMB/BSC-CTM model at regional and global scales, 24th ACCENT/GLOREAM Workshop, vol. . Barcelona Supercomputing Center – Centro Nacional de Supercomputación , 17-19 October, 2012. Barcelona, Spain, 2012.
P. Radojkovic, Girbal, S., Grasset, A., Quiñones, E., Yehia, S., and Cazorla, F., On the Evaluation of the Impact of Shared Resources in Multithreaded COTS Processors in Time-Critical Environments, ACM Transactions on Architecture and Code Optimization, vol. 8. 2012.
O. Jorba, Badia, A., Spada, M., Perez, C., Janjic, Z., Baldasano, J. M., and Dabdub, D., Evaluation of the NMMB/BSC Chemical Transport Model from Global to Regional Scales, 12th EMS Annual Meeting & 9th European Conference on Applied Climatology (ECAC), vol. . European Meteorological Society (EMS), 10-14 September, 2012. Łódź, Poland, , 2012.
S. Djebali, Lagarde, J., Kapranov, P., Lacroix, V., Borel, C., Mudge, J. M., Howald, C., Foissac, S., Ucla, C., Chrast, J., Ribeca, P., Martin, D., Murray, R. R., Yang, X., Ghamsari, L., Lin, C., Bell, I., Dumais, E., Drenkow, J., Tress, M. L., Gelpí, J. L., Orozco, M., Valencia, A., van Berkum, N. L., Lajoie, B. R., Vidal, M., Stamatoyannopoulos, J., Batut, P., Dobin, A., Harrow, J., Hubbard, T., Dekker, J., Frankish, A., Salehi-Ashtiani, K., Reymond, A., Antonarakis, S. E., Guigó, R., and Gingeras, T. R., Evidence for transcript networks composed of chimeric RNAs in human cells., PloS one, vol. 7, no. 1. p. e28213, 2012.
J. C. M. Gallego, Gomez, A., Carril, L., Rodriguez, Z. M., Lezzi, D., Rafanell, R., and Badia, R. M., Execution of Monte Carlo treatment verification on cloud using COMPSs platform, Third European Workshop on Monte Carl Treatment Planning. Seville, Spain, pp. 186–189, 2012.
B. P. Cossins, Hosseini, A., and Guallar, V., Exploration of Protein Conformational Change with PELE and Meta-Dynamics, Journal of Chemical Theory and Computation, vol. 8. pp. 959-965, 2012.
P. D. Dans, Pérez, A., Faustino, I., Lavery, R., and Orozco, M., Exploring polymorphisms in B-DNA helical conformations., Nucleic acids research, vol. 40, no. 21. pp. 10668-78, 2012.
M. Klemm, Duran, A., Tian, X., Saito, H., Caballero, D., and Martorell, X., Extending OpenMP* with vector constructs for modern multicore SIMD architectures, Proceedings of the 8th international conference on OpenMP in a Heterogeneous World. Springer-Verlag, Berlin, Heidelberg, pp. 59–72, 2012.
O. Carrillo, Laughton, C. A., and Orozco, M., Fast Atomistic Molecular Dynamics Simulations from Essential Dynamics Samplings, J. Chem. Theory Comput. 2012.
P. Sfriso, Emperador, A., Orellana, L., Hospital, A., Gelpí, J. L., and Orozco, M., Finding Conformational Transition Pathways from Discrete Molecular Dynamics Simulations, Journal of Chemical Theory and Computation, vol. 8. pp. 4707-4718, 2012.
A. - S. J, R, A., Houzeaux, G., and Vázquez, M., A framework for anti-arrhythmic drugs testing using a multi-scale computational heart employing Alya Red, UT Austin - Portugal Workshop on Modeling and Simulation of physiological systems. 2012.
R. Tolosana-Delgado, Soret, A., Jorba, O., Sánchez-Arcilla, A., and Baldasano, J. M., A framework for assessing the impact of atmospheric coupling and altimeter assimilation on wave predictions at the Catalan-Balearic Sea (NW Mediterranean), WISE 2012-19th International Conference (Waves in Shallow Environments). LIM/UPC - Laboratorio de Ingeniería Marítima , 16-18 April, 2012. Barcelona, Spain, 2012.
A. Pérez, Luque, F. J., and Orozco, M., Frontiers in Molecular Dynamics Simulations of DNA., Accounts of chemical research. 2012.
F. Rubio, Hanzich, M., Farrès, A., de la Puente, J., Ferrer, M., and Cela, J. M., Generalized Elastic Staggered Grids on Multi-GPU Platforms, SEG Technical Program Expanded Abstracts. pp. 1-5, 2012.
N. Utz, Meyer, T., Rink, G., Orozco, M., and Koslowski, T., Geometry, Dynamics, and Electronic Structure of DNA–Carbon Nanotube Hybrids, J. Phys. Chem. C, vol. 116 (20), pp 11278–11282. 2012.
Í. Goiri, Le, K., Nguyen, T. D., Guitart, J., Torres, J., and Bianchini, R., GreenHadoop: leveraging green energy in data-processing frameworks, 7th ACM european conference on Computer Systems (EuroSys'12). ACM, Bern, Switzerland, pp. 57–70, 2012.
P. Kokkalis, Mamouri, R. E., Todua, M., Didebulidze, G. G., Papayannis, A., Amiridis, V., Basart, S., Pérez, C., and Baldasano, J. M., Ground-, satellite- and simulation-based analysis of a strong dust event over Abastumani, Georgia, during May 2009, International Journal of Remote Sensing, vol. 33, no. 16. TAYLOR & FRANCIS LTD , ENGLAND, pp. 4886 - 4901, 2012.
C. Villavieja, Hardware and Software Support for Distributed Shared Memory in Chip Multiprocessors, 2012.
L. Álvarez, Vilanova, L., González, M., Martorell, X., Navarro, N., and Ayguadé, E., Hardware-software coherence protocol for the coexistence of caches and local memories, Proceedings of the International Conference on High Performance Computing, Networking, Storage and Analysis. IEEE Computer Society Press, Los Alamitos, CA, USA, pp. 89:1–89:11, 2012.
G. Kestor, Gioiosa, R., Unsal, O., Cristal, A., and Valero, M., Hardware/Software Techniques for Assisted Execution Runtime Systems, The 2nd Workshop on Runtime Environments, Systems, Layering and Virtualized Environments (RESoLVE). 2012.
R. Sulpizio, Folch, A., Costa, A., Scaini, C., and Dellino, P., Hazard assessment of far-range volcanic ash dispersal from a violent Strombolian eruption at Somma-Vesuvius volcano, Naples, Italy: implications on civil aviation, Bulletin of Volcanology, vol. 74. Springer-Verlag, pp. 2205-2218, 2012.
D. Masone, Cabeza de Vaca, I., Pons, C., Fernández-Recio, J., and Guallar, V., H-bond network optimization in protein-protein complexes: are all-atom force field scores enough?, Proteins, vol. 80, no. 3. pp. 818-24, 2012.
M. Gonçalves, Barrera, T., Baldasano, J. M., and Cunillera, J., High Resolution Climate Scenarios by Dynamic Downscaling Modeling Techniques over the North Western Mediterranean Basin, 12th EMS Annual Meeting & 9th European Conference on Applied Climatology (ECAC), vol. . European Meteorological Society (EMS), 10-14 September, 2012. Łódź, Poland, 2012.
E. Tejedor, Farreras, M., Grove, D., Badia, R. M., Almasi, G., and Labarta, J., A high-productivity task-based programming model for clusters, Concurr. Comput. : Pract. Exper., vol. 24. John Wiley and Sons Ltd., Chichester, UK, pp. 2421–2448, 2012.
E. Tejedor, Farreras, M., Grove, D., Badia, R. M., Almasi, G., and Labarta, J., A High-Productivity Task-Based Programming Model for Clusters, Concurrency and Computation: Practice and Experience, vol. 24, no. 18. pp. 2421-2448, 2012.
M. Nadal-Ribelles, Conde, N., Flores, O., González-Vallinas, J., Eyras, E., Orozco, M., de Nadal, E., and Posas, F., Hog1 bypasses stress-mediated down-regulation of transcription by RNA polymerase II redistribution and chromatin remodeling., Genome biology, vol. 13, no. 11. p. R106, 2012.
M. Nadal-Ribelles, Conde, N., Flores, O., González-Vallinas, J., Eyras, E., Orozco, M., de Nadal, E., and Posas, F., Hog1 bypasses stress-mediated down-regulation of transcription by RNA polymerase II redistribution and chromatin remodeling., Genome biology, vol. 13, no. 11. p. R106, 2012.
B. Mohr, Voevedin, V., Giménez, J., Hagersten, E., Knüpfer, A., Nikitenko, D. A., Nilsson, M., Servat, H., Shah, A., Winkler, F., Wolf, F., and Zhujov, I., The HOPSA Workflow and Tools, Proceedings of the 6th International Parallel Tools Workshop (Stuttgart, Germany). Springer, 2012.
B. Varghese, McKee, G. T., and Alexandrov, V., Hybrid Agent-Based Approach for Automated Fault Tolerance. SIAM Parallel Processing for Scientific Computing proceedings, Savannah, Georgia, USA, 2012.
J. Labarta, Marjanovic, V., Ayguadé, E., Badia, R. M., and Valero, M., Hybrid Parallel Programming with MPI/StarSs, in Applications, Tools and Techniques on the Road to Exascale Computing, IOS Press, 2012.

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