Publications

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Author Title Type [ Year(Asc)]
2012
A. Badia and Jorba, O., Evaluation of the gas-phase results of the online NMMB/BSC-CTM model at regional and global scales, 24th ACCENT/GLOREAM Workshop, vol. . Barcelona Supercomputing Center – Centro Nacional de Supercomputación , 17-19 October, 2012. Barcelona, Spain, 2012.
P. Radojkovic, Girbal, S., Grasset, A., Quiñones, E., Yehia, S., and Cazorla, F., On the Evaluation of the Impact of Shared Resources in Multithreaded COTS Processors in Time-Critical Environments, ACM Transactions on Architecture and Code Optimization, vol. 8. 2012.
O. Jorba, Badia, A., Spada, M., Perez, C., Janjic, Z., Baldasano, J. M., and Dabdub, D., Evaluation of the NMMB/BSC Chemical Transport Model from Global to Regional Scales, 12th EMS Annual Meeting & 9th European Conference on Applied Climatology (ECAC), vol. . European Meteorological Society (EMS), 10-14 September, 2012. Łódź, Poland, , 2012.
S. Djebali, Lagarde, J., Kapranov, P., Lacroix, V., Borel, C., Mudge, J. M., Howald, C., Foissac, S., Ucla, C., Chrast, J., Ribeca, P., Martin, D., Murray, R. R., Yang, X., Ghamsari, L., Lin, C., Bell, I., Dumais, E., Drenkow, J., Tress, M. L., Gelpí, J. L., Orozco, M., Valencia, A., van Berkum, N. L., Lajoie, B. R., Vidal, M., Stamatoyannopoulos, J., Batut, P., Dobin, A., Harrow, J., Hubbard, T., Dekker, J., Frankish, A., Salehi-Ashtiani, K., Reymond, A., Antonarakis, S. E., Guigó, R., and Gingeras, T. R., Evidence for transcript networks composed of chimeric RNAs in human cells., PloS one, vol. 7, no. 1. p. e28213, 2012.
J. C. M. Gallego, Gomez, A., Carril, L., Rodriguez, Z. M., Lezzi, D., Rafanell, R., and Badia, R. M., Execution of Monte Carlo treatment verification on cloud using COMPSs platform, Third European Workshop on Monte Carl Treatment Planning. Seville, Spain, pp. 186–189, 2012.
B. P. Cossins, Hosseini, A., and Guallar, V., Exploration of Protein Conformational Change with PELE and Meta-Dynamics, Journal of Chemical Theory and Computation, vol. 8. pp. 959-965, 2012.
P. D. Dans, Pérez, A., Faustino, I., Lavery, R., and Orozco, M., Exploring polymorphisms in B-DNA helical conformations., Nucleic acids research, vol. 40, no. 21. pp. 10668-78, 2012.
M. Klemm, Duran, A., Tian, X., Saito, H., Caballero, D., and Martorell, X., Extending OpenMP* with vector constructs for modern multicore SIMD architectures, Proceedings of the 8th international conference on OpenMP in a Heterogeneous World. Springer-Verlag, Berlin, Heidelberg, pp. 59–72, 2012.
O. Carrillo, Laughton, C. A., and Orozco, M., Fast Atomistic Molecular Dynamics Simulations from Essential Dynamics Samplings, J. Chem. Theory Comput. 2012.
P. Sfriso, Emperador, A., Orellana, L., Hospital, A., Gelpí, J. L., and Orozco, M., Finding Conformational Transition Pathways from Discrete Molecular Dynamics Simulations, Journal of Chemical Theory and Computation, vol. 8. pp. 4707-4718, 2012.
A. - S. J, R, A., Houzeaux, G., and Vázquez, M., A framework for anti-arrhythmic drugs testing using a multi-scale computational heart employing Alya Red, UT Austin - Portugal Workshop on Modeling and Simulation of physiological systems. 2012.
R. Tolosana-Delgado, Soret, A., Jorba, O., Sánchez-Arcilla, A., and Baldasano, J. M., A framework for assessing the impact of atmospheric coupling and altimeter assimilation on wave predictions at the Catalan-Balearic Sea (NW Mediterranean), WISE 2012-19th International Conference (Waves in Shallow Environments). LIM/UPC - Laboratorio de Ingeniería Marítima , 16-18 April, 2012. Barcelona, Spain, 2012.
A. Pérez, Luque, F. J., and Orozco, M., Frontiers in Molecular Dynamics Simulations of DNA., Accounts of chemical research. 2012.
F. Rubio, Hanzich, M., Farrès, A., de la Puente, J., Ferrer, M., and Cela, J. M., Generalized Elastic Staggered Grids on Multi-GPU Platforms, SEG Technical Program Expanded Abstracts. pp. 1-5, 2012.
N. Utz, Meyer, T., Rink, G., Orozco, M., and Koslowski, T., Geometry, Dynamics, and Electronic Structure of DNA–Carbon Nanotube Hybrids, J. Phys. Chem. C, vol. 116 (20), pp 11278–11282. 2012.
Í. Goiri, Le, K., Nguyen, T. D., Guitart, J., Torres, J., and Bianchini, R., GreenHadoop: leveraging green energy in data-processing frameworks, 7th ACM european conference on Computer Systems (EuroSys'12). ACM, Bern, Switzerland, pp. 57–70, 2012.
P. Kokkalis, Mamouri, R. E., Todua, M., Didebulidze, G. G., Papayannis, A., Amiridis, V., Basart, S., Pérez, C., and Baldasano, J. M., Ground-, satellite- and simulation-based analysis of a strong dust event over Abastumani, Georgia, during May 2009, International Journal of Remote Sensing, vol. 33, no. 16. TAYLOR & FRANCIS LTD , ENGLAND, pp. 4886 - 4901, 2012.
C. Villavieja, Hardware and Software Support for Distributed Shared Memory in Chip Multiprocessors, 2012.
L. Álvarez, Vilanova, L., González, M., Martorell, X., Navarro, N., and Ayguadé, E., Hardware-software coherence protocol for the coexistence of caches and local memories, Proceedings of the International Conference on High Performance Computing, Networking, Storage and Analysis. IEEE Computer Society Press, Los Alamitos, CA, USA, pp. 89:1–89:11, 2012.
G. Kestor, Gioiosa, R., Unsal, O., Cristal, A., and Valero, M., Hardware/Software Techniques for Assisted Execution Runtime Systems, The 2nd Workshop on Runtime Environments, Systems, Layering and Virtualized Environments (RESoLVE). 2012.
R. Sulpizio, Folch, A., Costa, A., Scaini, C., and Dellino, P., Hazard assessment of far-range volcanic ash dispersal from a violent Strombolian eruption at Somma-Vesuvius volcano, Naples, Italy: implications on civil aviation, Bulletin of Volcanology, vol. 74. Springer-Verlag, pp. 2205-2218, 2012.
D. Masone, Cabeza de Vaca, I., Pons, C., Fernández-Recio, J., and Guallar, V., H-bond network optimization in protein-protein complexes: are all-atom force field scores enough?, Proteins, vol. 80, no. 3. pp. 818-24, 2012.
M. Gonçalves, Barrera, T., Baldasano, J. M., and Cunillera, J., High Resolution Climate Scenarios by Dynamic Downscaling Modeling Techniques over the North Western Mediterranean Basin, 12th EMS Annual Meeting & 9th European Conference on Applied Climatology (ECAC), vol. . European Meteorological Society (EMS), 10-14 September, 2012. Łódź, Poland, 2012.
E. Tejedor, Farreras, M., Grove, D., Badia, R. M., Almasi, G., and Labarta, J., A high-productivity task-based programming model for clusters, Concurr. Comput. : Pract. Exper., vol. 24. John Wiley and Sons Ltd., Chichester, UK, pp. 2421–2448, 2012.
E. Tejedor, Farreras, M., Grove, D., Badia, R. M., Almasi, G., and Labarta, J., A High-Productivity Task-Based Programming Model for Clusters, Concurrency and Computation: Practice and Experience, vol. 24, no. 18. pp. 2421-2448, 2012.
M. Nadal-Ribelles, Conde, N., Flores, O., González-Vallinas, J., Eyras, E., Orozco, M., de Nadal, E., and Posas, F., Hog1 bypasses stress-mediated down-regulation of transcription by RNA polymerase II redistribution and chromatin remodeling., Genome biology, vol. 13, no. 11. p. R106, 2012.
M. Nadal-Ribelles, Conde, N., Flores, O., González-Vallinas, J., Eyras, E., Orozco, M., de Nadal, E., and Posas, F., Hog1 bypasses stress-mediated down-regulation of transcription by RNA polymerase II redistribution and chromatin remodeling., Genome biology, vol. 13, no. 11. p. R106, 2012.
B. Mohr, Voevedin, V., Giménez, J., Hagersten, E., Knüpfer, A., Nikitenko, D. A., Nilsson, M., Servat, H., Shah, A., Winkler, F., Wolf, F., and Zhujov, I., The HOPSA Workflow and Tools, Proceedings of the 6th International Parallel Tools Workshop (Stuttgart, Germany). Springer, 2012.
B. Varghese, McKee, G. T., and Alexandrov, V., Hybrid Agent-Based Approach for Automated Fault Tolerance. SIAM Parallel Processing for Scientific Computing proceedings, Savannah, Georgia, USA, 2012.
J. Labarta, Marjanovic, V., Ayguadé, E., Badia, R. M., and Valero, M., Hybrid Parallel Programming with MPI/StarSs, in Applications, Tools and Techniques on the Road to Exascale Computing, IOS Press, 2012.
E. Ayguadé, Badia, R. M., Bellens, P., Bueno-Hedo, J., Duran, A., Etsion, Y., Farreras, M., Ferrer, R., Labarta, J., Marjanovic, V., Martinell, L., Martorell, X., Pérez, J. M., Planas, J., Ramirez, A., Teruel, X., Tsalouchidou, I., and Valero, M., Hybrid/Heterogeneous Programming with OmpSs and its Software/Hardware Implications, in Programming Multi-Core and Many-Core Computing Systems (Wiley Series on Parallel and Distributed Computing) , Wiley Series on "Parallel and Distributed Computing"., John Wiley & Sons, Inc., 2012.
M. Espona-Fiedler, Soto-Cerrato, V., Hosseini, A., Lizcano, J. M., Guallar, V., Quesada, R., Gao, T., and Pérez-Tomás, R., Identification of dual mTORC1 and mTORC2 inhibitors in melanoma cells: Prodigiosin vs. obatoclax., Biochemical pharmacology, vol. 83, no. 4. pp. 489-96, 2012.
J. M. Mercader, Puiggros, M., Segrè, A. V., Planet, E., Sorianello, E., Sebastian, D., Rodriguez-Cuenca, S., Ribas, V., Bonàs-Guarch, S., Draghici, S., Yang, C., Mora, S., Vidal-Puig, A., Dupuis, J., Florez, J. C., Zorzano, A., and Torrents, D., Identification of novel type 2 diabetes candidate genes involved in the crosstalk between the mitochondrial and the insulin signaling systems., PLoS genetics, vol. 8, no. 12. p. e1003046, 2012.
M. Gonçalves, Dabdub, D., Chang, W. L., Jorba, O., and Baldasano, J. M., Impact of HONO sources on the performance of mesoscale air quality models, Atmospheric Environment, vol. 54, no. July. PERGAMON-ELSEVIER SCIENCE LTD, ENGLAND, pp. 168 - 176, 2012.
A. Pérez, Castellazzi, C. L., Battistini, F., Collinet, K., Flores, O., Deniz, O., Ruiz, M. L., Torrents, D., Eritja, R., Soler-López, M., and Orozco, M., Impact of methylation on the physical properties of DNA., Biophysical journal, vol. 102, no. 9. pp. 2140-8, 2012.
M. Spada, Jorba, O., Pérez, C., Janjic, Z., and Baldasano, J. M., Implementation and Evaluation of a Sea-salt module within the on-line multiscale NMMB/BSC-CTM, 24th ACCENT/GLOREAM Workshop, vol. . Barcelona Supercomputing Center – Centro Nacional de Supercomputación , 17-19 October, 2012. Barcelona, Spain, 2012.
M. Spada, Jorba, O., Pérez, C., Janjic, Z., and Baldasano, J. M., Implementation of a sea-salt module within the NMMB/BSC Chemical Transport Model: global simulations and comparisons with observations, 9th European Geosciences Union Conference (EGU) General Assembly. Geophysical Research Abstracts, vol. 14. European Geosciences Union (EGU), 22-27 April, 2012. Viena, Austria, 2012.
M. Brugger, Nou, R., and Cortes, T., Improving disk I/O by paravirtualizing block requests , KVM Forum. 2012.
H. Servat, Teruel, X., Llort, G., Duran, A., Giménez, J., Martorell, X., Ayguadé, E., and Labarta, J., On the Instrumentation of OpenMP and OmpSs Tasking Constructs, Euro-Par 2012: Parallel Processing Workshops. Lecture Notes in Computer Science, vol. 7640. 5th Workshop on Productivity and Performance (PROPER 2012) Tools for HPC Application Development, Rhodes Island, Greece, pp. 414-428, 2012.
V. Gajinov, Stipić, S., Unsal, O., Harris, T., Ayguadé, E., and Cristal, A., Integrating Dataflow Abstractions into the Shared Memory Model, Computer Architecture and High Performance Computing (SBAC-PAD), 2012 IEEE 24th International Symposium on. IEEE, pp. 243–251, 2012.
E. Terradellas, Basart, S., Schulz, M., Baldasano, J. M., Pejanovic, G., Menut, L., Benedetti, A., Jorba, O., Mulcahy, J., and Benincasa, F., Intercomparison and evaluation of dust prediction models, 24th ACCENT/GLOREAM Workshop, vol. . Barcelona Supercomputing Center – Centro Nacional de Supercomputación , 17-19 October, 2012. Barcelona, Spain, 2012.
E. Terradellas, Basart, S., Schulz, M., Baldasano, J. M., Morcrette, J. J., Pejanovic, G., Menut, L., Benedetti, A., Jorba, O., Nickovic, S., and Benincasa, F., Intercomparison of Dust Prediction Models in the ramework of the WMO SDS-WAS programme, European Aerosol Conference 2012 (EAC-2012), vol. . European Aerosol Assembly (EAA), 2-7 September, 2012. Granada. Spain, 2012.
D. Lezzi, Memon, S., Rafanell, R., Soncu, H., Riedel, M., and Badia, R. M., Interoperable execution of eScience applications on Grids & Clouds through open standards, Proceedings of the UNICORE Summit 2012, vol. 15, no. IAS Series. Forschungszentrum Jülich, pp. 121-131, 2012.
L. Valentova, Gallovic, F., Ruzek, B., and de la Puente, J., Interpretation of ambient noise cross-correlation traveltimes: Finite-frequency tomography of Love group velocities in the Czech Republic, EGU General Assembly Conference Abstracts, vol. 14. p. 13580, 2012.
N. Azuelos, Etsion, Y., Keidar, I., Zaks, A., and Ayguadé, E., Introducing Speculative Optimizations in Task Dataflow with Language Extensions and Runtime Support, 2nd Workshop on Data-Flow Execution Models for Extreme Scale Computing (DFM 2012), In conjunction with 21st International Conference on Parallel Architectures and Compilation Techniques (PACT-2012). Minneapolis MN (USA), 2012.
J. M. Baldasano, Inventario de emisiones GEI y Cambio Climático: Visión europea, Seminario “Tratamiento de Aguas Residuales en el contexto del Cambio Climático: Gases de efecto invernadero y Análisis de Ciclo de Vida”, vol. . Instituto de Ingeniería, UNAM, 31 October, 2012. Mexico, 2012.
P. Radojkovic, Carpenter, P., Moreto, M., Ramirez, A., and Cazorla, F., Kernel Partitioning of Streaming Applications: A Statistical Approach to an NP-complete Problem, International Symposium on Microarchitecture (MICRO-45). 2012.
X. Rubio-Campillo and Hernàndez, F. X., La batalla de Talamanca, un combate del siglo XVIII, Revista Universitaria de Historia Militar , no. 1. pp. 29-48, 2012.
J. M. Baldasano, La ingeniería ambiental como disciplina básica hacia la sostenibilidad, CMU Ramon Llull, vol. . Universitat de Barcelona, 26 November, 2012. Barcelona, Spain, 2012.
J. M. Baldasano, La situación actual de la gestión de residuos en España, Congreso Nacional del Medio Ambiente (CONAMA 12). Valorización energética como parte de la solución integral de la gestión de residuos (ST-9), vol. . Fundación CONAMA, 26-30 November, 2012. Madrid, Spain, 2012.

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